WormBase Tree Display for Gene: WBGene00015471
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| WBGene00015471 | SMap | S_parent | Sequence | C05D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lmp-2 | Person_evidence | WBPerson298 | |||||
| Sequence_name | C05D9.2 | ||||||||
| Molecular_name | C05D9.2 | ||||||||
| C05D9.2.1 | |||||||||
| CE07928 | |||||||||
| C05D9.2.2 | |||||||||
| C05D9.2.3 | |||||||||
| Other_name | CELE_C05D9.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lmp-2 | ||||||||
| DB_info | Database | AceView | gene | XB745 | |||||
| WormQTL | gene | WBGene00015471 | |||||||
| WormFlux | gene | WBGene00015471 | |||||||
| NDB | locus_tag | CELE_C05D9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015471|UniProtKB=Q9GYK0 | |||||||
| family | PTHR11506 | ||||||||
| NCBI | gene | 180467 | |||||||
| RefSeq | protein | NM_001392725.1 | |||||||
| TREEFAM | TREEFAM_ID | TF316339 | |||||||
| TrEMBL | UniProtAcc | Q9GYK0 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GYK0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jun 2005 10:01:00 | WBPerson2970 | Name_change | CGC_name | lmp-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lmp | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00092775 | ||||||||
| 00092776 | |||||||||
| 00092777 | |||||||||
| 00092778 | |||||||||
| 00092779 | |||||||||
| 00092780 | |||||||||
| 00092781 | |||||||||
| 00121372 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00003053 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. | Paper_evidence | WBPaper00030788 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jun 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in late endosome membrane; lysosomal membrane; and plasma membrane. Is an ortholog of human LAMP1 (lysosomal associated membrane protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D9.2 | |||||||
| Corresponding_transcript | C05D9.2.1 | ||||||||
| C05D9.2.2 | |||||||||
| C05D9.2.3 | |||||||||
| Other_sequence | CBC17005_1 | ||||||||
| CJC09270_1 | |||||||||
| CBC07432_1 | |||||||||
| Associated_feature | WBsf647819 | ||||||||
| WBsf235314 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000249 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028504 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010212 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039761 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076085 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13184 | ||||||||
| Expr1021936 | |||||||||
| Expr1143848 | |||||||||
| Expr2013236 | |||||||||
| Expr2031467 | |||||||||
| Drives_construct | WBCnstr00028820 | ||||||||
| Construct_product | WBCnstr00028820 | ||||||||
| Microarray_results | SMD_C05D9.2 | ||||||||
| 173232_s_at | |||||||||
| 182341_at | |||||||||
| A_12_P117604 | |||||||||
| Aff_C05D9.2 | |||||||||
| GPL13394_WBGene00015471 | |||||||||
| GPL13914_C05D9.2 | |||||||||
| GPL14144_C05D9.2_251-310_0.925_3_B | |||||||||
| GPL14144_C05D9.2_419-478_0.918_4_C | |||||||||
| GPL14144_C05D9.2_686-745_0.932_1_A | |||||||||
| GPL19516_CGZ0002629 | |||||||||
| GPL19516_CGZ0002630 | |||||||||
| GPL19516_CGZ0002631 | |||||||||
| GPL21109_C05D9.2.1 | |||||||||
| GPL3518_CE07928 | |||||||||
| GPL8304_CE_WBGene00015471_A | |||||||||
| GPL8304_CE_WBGene00015471_B | |||||||||
| GPL8304_CE_WBGene00015471_C | |||||||||
| GPL8673_C05D9_2P00129 | |||||||||
| GPL8673_C05D9_2P00271 | |||||||||
| GPL8673_C05D9_2P00499 | |||||||||
| GPL9450_C05D9.2 | |||||||||
| cea2.p.132795 | |||||||||
| Expression_cluster (169) | |||||||||
| Map_info | Map | X | Position | -18.5049 | |||||
| Positive | Positive_clone | C05D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (8) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
