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WormBase Tree Display for Gene: WBGene00003417

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Name Class

WBGene00003417EvidenceCGC_data_submission
SMapS_parentSequenceY41C4A
IdentityVersion1
NameCGC_namemrt-2Person_evidenceWBPerson261
Sequence_nameY41C4A.14
Molecular_nameY41C4A.14
Y41C4A.14.1
CE29376
Y41C4A.14.2
Other_namehpr-1
CELE_Y41C4A.14Accession_evidenceNDBBX284603
Public_namemrt-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmrt
Allele (132)
StrainWBStrain00031909
WBStrain00004639
RNASeq_FPKM (74)
GO_annotation (26)
OrthologWBGene00063076Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034017Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00155087Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00135283Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226774Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4070Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3083Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15766Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8472Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11264Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7467Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7472Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7495Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14802Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11873Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9128Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10022Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-mrt-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold406.g921Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00974.g17233Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17637Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010270Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g18327Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30120500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g9086Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241661Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00092716Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00287374Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005895Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
FB:FBgn0026778Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-040426-1873Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:9806Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1316678Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:1306496Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
Structured_descriptionConcise_descriptionmrt-2 encodes a highly conserved DNA-damage checkpoint protein homologous to the RAD1 protein found in S. pombe, Drosophila, and mammals; mrt-2 functions in the germline to maintain chromosomal integrity, and promote cell cycle arrest in mitotic germ cells and apoptosis in meiotic germ cells in response to genotoxic agents (DNA damage); mrt-2 mutations result in progressive telomere loss, chromosome fusion, and aneuploidy, eventually leading to germline mortality; MRT-2 interacts with HUS-1 and HPR-9, also conserved DNA-damage checkpoint proteins.Paper_evidenceWBPaper00003353
WBPaper00003886
WBPaper00003984
WBPaper00005237
WBPaper00005597
Curator_confirmedWBPerson1843
Date_last_updated14 Jun 2011 00:00:00
Automated_descriptionPredicted to enable 3'-5' exonuclease activity and damaged DNA binding activity. Involved in DNA damage response and telomere maintenance via telomerase. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Is an ortholog of human RAD1 (RAD1 checkpoint DNA exonuclease).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY41C4A.14
Corresponding_transcriptY41C4A.14.1
Y41C4A.14.2
Other_sequenceJI459899.1
CBC00612_1
CR07641
HG06632
EY472449.1
GP01754
OF00726
GE638976.1
HCC04778_1
MA03330
Associated_featureWBsf994482
WBsf225855
Experimental_infoRNAi_resultWBRNAi00064153Inferred_automaticallyRNAi_primary
WBRNAi00022481Inferred_automaticallyRNAi_primary
WBRNAi00006768Inferred_automaticallyRNAi_primary
WBRNAi00064152Inferred_automaticallyRNAi_primary
WBRNAi00067556Inferred_automaticallyRNAi_primary
WBRNAi00064105Inferred_automaticallyRNAi_primary
WBRNAi00056356Inferred_automaticallyRNAi_primary
WBRNAi00027845Inferred_automaticallyRNAi_primary
Expr_patternExpr1016257
Expr1031584
Expr1159841
Expr2013762
Expr2031997
Drives_constructWBCnstr00005145
Construct_productWBCnstr00005145
Microarray_resultsSMD_Y41C4A.14
188179_at
A_12_P103025
Aff_Y41C4A.14
GPL13394_WBGene00003417
GPL13914_Y41C4A.14
GPL14144_Y41C4A.14_297-356_0.910_8_A
GPL14144_Y41C4A.14_427-486_0.879_16_C
GPL14144_Y41C4A.14_492-551_0.927_4_B
GPL19516_CGZ0045444
GPL21109_Y41C4A.14
GPL3518_CE29376
GPL8304_CE_WBGene00003417_A
GPL8304_CE_WBGene00003417_B
GPL8304_CE_WBGene00003417_C
GPL8673_Y41C4A_14P00087
GPL8673_Y41C4A_14P00407
GPL8673_Y41C4A_14P00651
GPL9450_Y41C4A.14
cea2.c.24027
Expression_cluster (108)
Interaction (197)
WBProcessWBbiopr:00000014
WBbiopr:00000091
Map_infoMapIIIPosition12.0743Error0.051368
PositivePositive_cloneY41C4AInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4239
4497
Pseudo_map_position
Reference (76)
PictureWBPicture0000013091
RemarkSequence connection from [Ahmed S, Hodgkin J]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene