WormBase Tree Display for Gene: WBGene00011979
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WBGene00011979 | SMap | S_parent | Sequence | T24B8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | sysm-1 | |||||
Sequence_name | T24B8.5 | ||||||
Molecular_name | T24B8.5 | ||||||
T24B8.5.1 | |||||||
CE41161 | |||||||
Other_name | CELE_T24B8.5 | Accession_evidence | NDB | BX284602 | |||
Public_name | sysm-1 | ||||||
DB_info | Database | AceView | gene | 2J372 | |||
WormQTL | gene | WBGene00011979 | |||||
WormFlux | gene | WBGene00011979 | |||||
NDB | locus_tag | CELE_T24B8.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00011979|UniProtKB=Q22714 | |||||
family | PTHR21724 | ||||||
NCBI | gene | 188838 | |||||
RefSeq | protein | NM_063536.5 | |||||
TREEFAM | TREEFAM_ID | TF319943 | |||||
TrEMBL | UniProtAcc | Q22714 | |||||
UniProt_GCRP | UniProtAcc | Q22714 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sysm | ||||||
Allele (18) | |||||||
Strain | WBStrain00037353 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00076167 | ||||||
00105579 | |||||||
00105590 | |||||||
Ortholog | WBGene00053235 | Caenorhabditis remanei | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00026151 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
WBGene00146796 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
CSP26.g16027 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||
CSP31.g27304 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
CSP40.g985 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||
Cni-T24B8.5 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||
FL83_20686 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||
GCK72_005659 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
chrII_pilon.g5403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | T24B8.5 encodes an ShK-like toxin peptide containing a domain rich in cysteine residues found in the sea anemone potassium channel inhibitor ShK; T24B8.5 expression is regulated by the PMK-1/p38 MAPK signaling pathway and the ATF-7 transcription factor, which is a downstream target of PMK-1. | Paper_evidence | WBPaper00035315 | |||
WBPaper00036086 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 07 Apr 2010 00:00:00 | ||||||
Automated_description | Involved in antibacterial innate immune response. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T24B8.5 | |||||
Corresponding_CDS_history | T24B8.5:wp176 | ||||||
Corresponding_transcript | T24B8.5.1 | ||||||
Associated_feature (8) | |||||||
Experimental_info | RNAi_result | WBRNAi00054021 | Inferred_automatically | RNAi_primary | |||
WBRNAi00082506 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019134 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00095221 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035909 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12209 | ||||||
Expr12687 | |||||||
Expr14285 | |||||||
Expr1010784 | |||||||
Expr1157565 | |||||||
Expr2006438 | |||||||
Expr2024658 | |||||||
Drives_construct | WBCnstr00005842 | ||||||
WBCnstr00005992 | |||||||
WBCnstr00009567 | |||||||
WBCnstr00030230 | |||||||
Construct_product | WBCnstr00030230 | ||||||
Microarray_results (23) | |||||||
Expression_cluster (389) | |||||||
Interaction | WBInteraction000031660 | ||||||
WBInteraction000273166 | |||||||
WBInteraction000312566 | |||||||
WBInteraction000313326 | |||||||
WBInteraction000316497 | |||||||
WBInteraction000327055 | |||||||
WBInteraction000350455 | |||||||
WBInteraction000386081 | |||||||
WBInteraction000402651 | |||||||
WBInteraction000504060 | |||||||
WBInteraction000504351 | |||||||
WBInteraction000504352 | |||||||
WBInteraction000504892 | |||||||
WBInteraction000519402 | |||||||
WBInteraction000523972 | |||||||
WBInteraction000525097 | |||||||
WBInteraction000525352 | |||||||
WBInteraction000525361 | |||||||
WBInteraction000544065 | |||||||
WBInteraction000544066 | |||||||
WBInteraction000544067 | |||||||
WBInteraction000549476 | |||||||
WBProcess | WBbiopr:00000039 | ||||||
Map_info | Map | II | Position | 1.00085 | |||
Positive | Positive_clone | T24B8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |