WormBase Tree Display for Gene: WBGene00011076
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WBGene00011076 | SMap | S_parent | Sequence | R07B1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | scav-5 | |||||||
Sequence_name | R07B1.3 | ||||||||
Molecular_name | R07B1.3 | ||||||||
R07B1.3.1 | |||||||||
CE47857 | |||||||||
Other_name | CELE_R07B1.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | scav-5 | ||||||||
DB_info | Database | AceView | gene | XK479 | |||||
WormQTL | gene | WBGene00011076 | |||||||
WormFlux | gene | WBGene00011076 | |||||||
NDB | locus_tag | CELE_R07B1.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011076|UniProtKB=Q09606 | |||||||
family | PTHR11923 | ||||||||
NCBI | gene | 181200 | |||||||
RefSeq | protein | NM_077250.7 | |||||||
SwissProt | UniProtAcc | Q09606 | |||||||
UniProt_GCRP | UniProtAcc | Q09606 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | scav-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | scav | ||||||||
Allele (49) | |||||||||
Strain | WBStrain00032107 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (6) | |||||||||
Ortholog (41) | |||||||||
Paralog | WBGene00008542 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015389 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00013039 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00013578 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R07B1.3 | |||||||
Corresponding_transcript | R07B1.3.1 | ||||||||
Other_sequence | CJC00424_1 | ||||||||
Associated_feature | WBsf648430 | ||||||||
WBsf663206 | |||||||||
WBsf1006555 | |||||||||
WBsf236205 | |||||||||
WBsf236206 | |||||||||
Experimental_info | RNAi_result | WBRNAi00017502 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00078837 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051412 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034677 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013043 | ||||||||
Expr1155102 | |||||||||
Expr2015618 | |||||||||
Expr2033853 | |||||||||
Drives_construct | WBCnstr00030950 | ||||||||
Construct_product | WBCnstr00030950 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (176) | |||||||||
Interaction | WBInteraction000182088 | ||||||||
WBInteraction000244191 | |||||||||
WBInteraction000265500 | |||||||||
WBInteraction000288854 | |||||||||
WBInteraction000294565 | |||||||||
WBInteraction000301361 | |||||||||
WBInteraction000301612 | |||||||||
WBInteraction000305737 | |||||||||
WBInteraction000308802 | |||||||||
WBInteraction000352469 | |||||||||
WBInteraction000353653 | |||||||||
WBInteraction000366920 | |||||||||
WBInteraction000373071 | |||||||||
WBInteraction000378250 | |||||||||
WBInteraction000378508 | |||||||||
WBInteraction000379199 | |||||||||
WBInteraction000379353 | |||||||||
WBInteraction000390838 | |||||||||
WBInteraction000404427 | |||||||||
WBInteraction000431278 | |||||||||
WBInteraction000448341 | |||||||||
WBInteraction000451368 | |||||||||
Map_info | Map | X | Position | 1.72968 | Error | 0.000308 | |||
Positive | Positive_clone | R07B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010266 | ||||||||
WBPaper00018248 | |||||||||
WBPaper00018249 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00061821 | |||||||||
WBPaper00065146 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |