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WormBase Tree Display for Gene: WBGene00001398

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Name Class

WBGene00001398SMapS_parentSequenceVZK822L
IdentityVersion1
NameCGC_namefat-6
Sequence_nameVZK822L.1
Molecular_nameVZK822L.1a
VZK822L.1a.1
CE18302
VZK822L.1b
CE44710
VZK822L.1c
CE44565
VZK822L.1b.1
VZK822L.1c.1
Other_nameCELE_VZK822L.1Accession_evidenceNDBBX284604
Public_namefat-6
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfat
Allele (33)
StrainWBStrain00004014
WBStrain00004016
WBStrain00004021
WBStrain00008409
WBStrain00030677
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (59)
ParalogWBGene00001397Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00001399Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionfat-6 encodes an Acyl-CoA desaturase (also known as delta-9 fatty acid desaturase); when expressed heterologously in S. cerevisiae, FAT-6 rescues the fatty acid auxotrophy of the ole1 delta-9 desaturase mutant; FAT-6 readily desaturates stearic acid (18:0), or similar fatty acids (17:0 or 18:1 delta-11 trans), but shows less activity on palmitic acid (16:0), and no activity on other medium chain fatty acids (14:0 or 15:0); based on similarity to mammalian Acyl-CoA desaturases, FAT-6 is predicted to localize to the endoplasmic reticulum membrane.Paper_evidenceWBPaper00004149
WBPaper00013538
WBPaper00013550
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated16 May 2014 00:00:00
Automated_descriptionEnables stearoyl-CoA 9-desaturase activity. Involved in innate immune response; long-chain fatty acid biosynthetic process; and post-embryonic development. Predicted to be located in endoplasmic reticulum membrane. Expressed in hypodermis. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 79. Is an ortholog of human SCD (stearoyl-CoA desaturase) and SCD5 (stearoyl-CoA desaturase 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112160Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:21088)
Molecular_infoCorresponding_CDSVZK822L.1a
VZK822L.1b
VZK822L.1c
Corresponding_transcriptVZK822L.1a.1
VZK822L.1b.1
VZK822L.1c.1
Other_sequence (71)
Associated_featureWBsf652264
WBsf979000
WBsf981829
WBsf230930
WBsf230931
Experimental_infoRNAi_result (38)
Expr_patternExpr4291
Expr4573
Expr1030837
Expr1158028
Expr2011439
Expr2029677
Drives_constructWBCnstr00011889
WBCnstr00036972
Construct_productWBCnstr00011889
WBCnstr00016672
WBCnstr00036972
Microarray_results (23)
Expression_cluster (261)
InteractionWBInteraction000005771
WBInteraction000005772
WBInteraction000008845
WBInteraction000008930
WBInteraction000008986
WBInteraction000008999
WBInteraction000009001
WBInteraction000009019
WBInteraction000009020
WBInteraction000009022
WBInteraction000009026
WBInteraction000044250
WBInteraction000050457
WBInteraction000050458
WBInteraction000050459
WBInteraction000050460
WBInteraction000052926
WBInteraction000101430
WBInteraction000105632
WBInteraction000118678
WBInteraction000118679
WBInteraction000124930
WBInteraction000127103
WBInteraction000133213
WBInteraction000133245
WBInteraction000134002
WBInteraction000138852
WBInteraction000141642
WBInteraction000146962
WBInteraction000147073
WBInteraction000148478
WBInteraction000149717
WBInteraction000151563
WBInteraction000151702
WBInteraction000152501
WBInteraction000156577
WBInteraction000159994
WBInteraction000161681
WBInteraction000165197
WBInteraction000172446
WBInteraction000175377
WBInteraction000176466
WBInteraction000178293
WBInteraction000179896
WBInteraction000180922
WBInteraction000186193
WBInteraction000186589
WBInteraction000187480
WBInteraction000187789
WBInteraction000187944
WBInteraction000188067
WBInteraction000188345
WBInteraction000188871
WBInteraction000189972
WBInteraction000191647
WBInteraction000191827
WBInteraction000194111
WBInteraction000195303
WBInteraction000195907
WBInteraction000196423
WBInteraction000196587
WBInteraction000197189
WBInteraction000197558
WBInteraction000197918
WBInteraction000198724
WBInteraction000202270
WBInteraction000203280
WBInteraction000204208
WBInteraction000204527
WBInteraction000204680
WBInteraction000205802
WBInteraction000206572
WBInteraction000207323
WBInteraction000208290
WBInteraction000211767
WBInteraction000212719
WBInteraction000213406
WBInteraction000213478
WBInteraction000213798
WBInteraction000220489
WBInteraction000221457
WBInteraction000221474
WBInteraction000221975
WBInteraction000223856
WBInteraction000224093
WBInteraction000225901
WBInteraction000226411
WBInteraction000227506
WBInteraction000230663
WBInteraction000230794
WBInteraction000231557
WBInteraction000233682
WBInteraction000235026
WBInteraction000235579
WBInteraction000236301
WBInteraction000237336
WBInteraction000237663
WBInteraction000237696
WBInteraction000241520
WBInteraction000241921
WBInteraction000242841
WBInteraction000244179
WBInteraction000244906
WBInteraction000244978
WBInteraction000245461
WBInteraction000246283
WBInteraction000246286
WBInteraction000247881
WBInteraction000249034
WBInteraction000249555
WBInteraction000250383
WBInteraction000250747
WBInteraction000251026
WBInteraction000251288
WBInteraction000251680
WBInteraction000254203
WBInteraction000255117
WBInteraction000255290
WBInteraction000255882
WBInteraction000256605
WBInteraction000257298
WBInteraction000258041
WBInteraction000259768
WBInteraction000262366
WBInteraction000263645
WBInteraction000264739
WBInteraction000268676
WBInteraction000268681
WBInteraction000269066
WBInteraction000269615
WBInteraction000270242
WBInteraction000273669
WBInteraction000274098
WBInteraction000274104
WBInteraction000274398
WBInteraction000276216
WBInteraction000277391
WBInteraction000277574
WBInteraction000279588
WBInteraction000279665
WBInteraction000280918
WBInteraction000282906
WBInteraction000284362
WBInteraction000284723
WBInteraction000285533
WBInteraction000286353
WBInteraction000287344
WBInteraction000292953
WBInteraction000295778
WBInteraction000295822
WBInteraction000298017
WBInteraction000298064
WBInteraction000298496
WBInteraction000298627
WBInteraction000298728
WBInteraction000298946
WBInteraction000299122
WBInteraction000301045
WBInteraction000304693
WBInteraction000305060
WBInteraction000309500
WBInteraction000312019
WBInteraction000313388
WBInteraction000313882
WBInteraction000313883
WBInteraction000313884
WBInteraction000313885
WBInteraction000314060
WBInteraction000315093
WBInteraction000319838
WBInteraction000319936
WBInteraction000320255
WBInteraction000320256
WBInteraction000320585
WBInteraction000324534
WBInteraction000324697
WBInteraction000324769
WBInteraction000325089
WBInteraction000327448
WBInteraction000328765
WBInteraction000329659
WBInteraction000330021
WBInteraction000331532
WBInteraction000334138
WBInteraction000335263
WBInteraction000337366
WBInteraction000337865
WBInteraction000339919
WBInteraction000340366
WBInteraction000344653
WBInteraction000345166
WBInteraction000346388
WBInteraction000348877
WBInteraction000349429
WBInteraction000350364
WBInteraction000352113
WBInteraction000352137
WBInteraction000354296
WBInteraction000355211
WBInteraction000355447
WBInteraction000357630
WBInteraction000358274
WBInteraction000358351
WBInteraction000360898
WBInteraction000362795
WBInteraction000362878
WBInteraction000364872
WBInteraction000365008
WBInteraction000365265
WBInteraction000371730
WBInteraction000371996
WBInteraction000372253
WBInteraction000372492
WBInteraction000372561
WBInteraction000374932
WBInteraction000375480
WBInteraction000377308
WBInteraction000378565
WBInteraction000379635
WBInteraction000380495
WBInteraction000380583
WBInteraction000385025
WBInteraction000389859
WBInteraction000392151
WBInteraction000393430
WBInteraction000396537
WBInteraction000398839
WBInteraction000398853
WBInteraction000400383
WBInteraction000400576
WBInteraction000401766
WBInteraction000405204
WBInteraction000405731
WBInteraction000414494
WBInteraction000420406
WBInteraction000421065
WBInteraction000424175
WBInteraction000428608
WBInteraction000429147
WBInteraction000429613
WBInteraction000429762
WBInteraction000432334
WBInteraction000433948
WBInteraction000436310
WBInteraction000437131
WBInteraction000437690
WBInteraction000439398
WBInteraction000439399
WBInteraction000441015
WBInteraction000441275
WBInteraction000442405
WBInteraction000447752
WBInteraction000449533
WBInteraction000449534
WBInteraction000449605
WBInteraction000449730
WBInteraction000449892
WBInteraction000450217
WBInteraction000452405
WBInteraction000454222
WBInteraction000455361
WBInteraction000455491
WBInteraction000455720
WBInteraction000456661
WBInteraction000457309
WBInteraction000461558
WBInteraction000461668
WBInteraction000463481
WBInteraction000463920
WBInteraction000464065
WBInteraction000464291
WBInteraction000464765
WBInteraction000464859
WBInteraction000464960
WBInteraction000465753
WBInteraction000465754
WBInteraction000466562
WBInteraction000466811
WBInteraction000468875
WBInteraction000470162
WBInteraction000471192
WBInteraction000471279
WBInteraction000471741
WBInteraction000472255
WBInteraction000473347
WBInteraction000474688
WBInteraction000474785
WBInteraction000502085
WBInteraction000502413
WBInteraction000502845
WBInteraction000503599
WBInteraction000504208
WBInteraction000504922
WBInteraction000517801
WBInteraction000517802
WBInteraction000517947
WBInteraction000517948
WBInteraction000517949
WBInteraction000517955
WBInteraction000517963
WBInteraction000519818
WBInteraction000524509
WBInteraction000525146
WBInteraction000535463
WBInteraction000548980
WBInteraction000558852
WBInteraction000579996
WBInteraction000582958
WBInteraction000585730
WBProcessWBbiopr:00000121
Map_infoMapIVPosition5.39558Error0.007351
PositivePositive_cloneVZK822lInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4302
4854
4821
Pseudo_map_position
Reference (108)
PictureWBPicture0000013088
WBPicture0000013096
WBPicture0000013098
Remark (2)
MethodGene