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WormBase Tree Display for Gene: WBGene00022856

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Name Class

WBGene00022856SMapS_parentSequenceZK1127
IdentityVersion2
NameCGC_namecth-2Person_evidenceWBPerson1711
Sequence_nameZK1127.10
Molecular_nameZK1127.10
ZK1127.10.1
CE07648
Other_nameCELE_ZK1127.10Accession_evidenceNDBBX284602
Public_namecth-2
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:06WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
210 Sep 2008 16:37:04WBPerson2970Name_changeCGC_namecth-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcth
Allele (15)
StrainWBStrain00007972
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (41)
ParalogWBGene00007533Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009048Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptioncth-2 encodes a putative cystathionine gamma-lyase; CTH-2 is orthologous to human CTH (OMIM:607657, mutated in cystathioninuria), extremely similar to its paralog CTH-1, and also paralogous to CBL-1; either CTH-2, or CTH-1, or both proteins weakly inhibitDHC-1 in vivo; CTH-2 is expressed in both larval and adult hypodermis, anal depressor muscle, and body wall muscle, as well as in adult vulval muscle and reproductive system; CTH-2 binds SMN-1 in yeast two-hybrid assays.Paper_evidenceWBPaper00006525
WBPaper00028478
WBPaper00030897
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated15 Sep 2011 00:00:00
Automated_descriptionPredicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in cystathioninuria. Is an ortholog of human CTH (cystathionine gamma-lyase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9252Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2501)
DOID:0090142Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2501)
Molecular_infoCorresponding_CDSZK1127.10
Corresponding_transcriptZK1127.10.1
Other_sequence (100)
Associated_featureWBsf650204
WBsf655366
WBsf655367
WBsf665670
WBsf988344
WBsf1012482
WBsf223280
WBsf223281
Experimental_infoRNAi_result (15)
Expr_patternChronogram527
Expr7188
Expr9561
Expr1017288
Expr1040112
Expr1162551
Expr2010574
Expr2028814
Drives_constructWBCnstr00002589
WBCnstr00023917
WBCnstr00040868
Construct_productWBCnstr00014126
WBCnstr00023917
WBCnstr00040868
WBCnstr00040869
WBCnstr00040870
WBCnstr00040871
WBCnstr00040872
Microarray_results (20)
Expression_cluster (250)
InteractionWBInteraction000008238
WBInteraction000008239
WBInteraction000106253
WBInteraction000119970
WBInteraction000181761
WBInteraction000181766
WBInteraction000181767
WBInteraction000181768
WBInteraction000181769
WBInteraction000187454
WBInteraction000190768
WBInteraction000200684
WBInteraction000203181
WBInteraction000204852
WBInteraction000222033
WBInteraction000222742
WBInteraction000224454
WBInteraction000228925
WBInteraction000238218
WBInteraction000254598
WBInteraction000271614
WBInteraction000276238
WBInteraction000279784
WBInteraction000287264
WBInteraction000293916
WBInteraction000294535
WBInteraction000296340
WBInteraction000297835
WBInteraction000305097
WBInteraction000308317
WBInteraction000312142
WBInteraction000315803
WBInteraction000315804
WBInteraction000315936
WBInteraction000326053
WBInteraction000330976
WBInteraction000334377
WBInteraction000336877
WBInteraction000343528
WBInteraction000346836
WBInteraction000347387
WBInteraction000349992
WBInteraction000352499
WBInteraction000354245
WBInteraction000356051
WBInteraction000356426
WBInteraction000358493
WBInteraction000380164
WBInteraction000390282
WBInteraction000396934
WBInteraction000407726
WBInteraction000410308
WBInteraction000415788
WBInteraction000415944
WBInteraction000416398
WBInteraction000428810
WBInteraction000433771
WBInteraction000436234
WBInteraction000439254
WBInteraction000447172
WBInteraction000452932
WBInteraction000457941
WBInteraction000461686
WBInteraction000461687
WBInteraction000464699
WBInteraction000465466
WBInteraction000465607
WBInteraction000466008
WBInteraction000467270
WBInteraction000471362
WBInteraction000471394
WBInteraction000471558
WBInteraction000471854
WBInteraction000504194
WBInteraction000543649
WBInteraction000547313
WBInteraction000547637
WBInteraction000550118
WBInteraction000551696
WBInteraction000554524
WBInteraction000562881
WBInteraction000562882
WBInteraction000562883
WBInteraction000562884
WBInteraction000562889
WBInteraction000562890
WBInteraction000568486
WBInteraction000570771
WBInteraction000578220
WBInteraction000578302
WBInteraction000581298
Map_infoMapIIPosition0.361481Error0.004775
PositivePositive_cloneZK1127Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028478
WBPaper00038444
WBPaper00038491
WBPaper00040135
WBPaper00040475
WBPaper00044324
WBPaper00049828
WBPaper00055090
WBPaper00056452
WBPaper00062518
WBPaper00063976
WBPaper00064989
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene