WormBase Tree Display for Gene: WBGene00000802
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WBGene00000802 | SMap | S_parent | Sequence | Y38A10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | crt-1 | |||||||
Sequence_name | Y38A10A.5 | ||||||||
Molecular_name | Y38A10A.5 | ||||||||
Y38A10A.5.1 | |||||||||
CE21562 | |||||||||
Other_name | CELE_Y38A10A.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | crt-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | crt | ||||||||
Allele (34) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes predicted 395 aa calreticulin(61% identity to mouse calreticulin). [Smith 1992] | ||||||||
Strain | WBStrain00023525 | ||||||||
WBStrain00031729 | |||||||||
WBStrain00040781 | |||||||||
WBStrain00040782 | |||||||||
WBStrain00040783 | |||||||||
WBStrain00040784 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (31) | |||||||||
Ortholog (47) | |||||||||
Paralog | WBGene00000567 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | crt-1 encodes an ortholog of calreticulin (a calcium-binding molecularchaperone of the endoplasmic reticulum); crt-1 is dispensable forviability, but required for normal sperm development, male matingefficiency, some forms of necrotic cell death, and hermaphrodite fertilityat high temperatures (which may reflect a stress response); crt-1expression is induced by stress; CRT-1 protein binds Ca(2+) and cansuppress heat-induced protein aggregation in vitro; crt-1(bz29) andcrt-1(bz30) mutants suppress necrotic cell death induced either bymec-4(d) or by a constitutively activated Gas subunit; crt-1(bz29);crt-1's suppression of necrosis is itself partly reversed by thapsigargin,which enhances calcium release from the endoplasmic reticulum;crt-1(bz30), and crt-1(jh101) mutants grow more slowly, and have havereduced broods at 25 deg. C.; crt-1(jh101) mutants are slightly shorterthan normal and have defective sperm; CRT-1 and ITR-1 serve partlyredundant functions in vivo, since crt-1;itr-1(sa73) are highly infertileand slow-growing with greatly slowed defecation; a number of proteins,notably HSP-3/4 and PDI-2/3, are over-expressed in crt-1(jh101) mutantsand crt-1(jh101);cnx-1(nr2009) double mutants. | Paper_evidence | WBPaper00004858 | |||||
WBPaper00004880 | |||||||||
WBPaper00027024 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 21 Aug 2006 00:00:00 | ||||||||
Automated_description | Enables calcium ion binding activity. Involved in several processes, including IRE1-mediated unfolded protein response; determination of adult lifespan; and hemidesmosome assembly. Located in cytoplasm. Expressed in several structures, including coelomocyte; excretory system; intestine; pharynx; and sperm. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in several diseases, including endocrine gland cancer (multiple); gastrointestinal system cancer (multiple); and hematologic cancer (multiple). Is an ortholog of human CALR (calreticulin). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00053621 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 04 Mar 2019 00:00:00 | ||||||||
Potential_model (22) | |||||||||
Models_disease_asserted | WBDOannot00000639 | ||||||||
Molecular_info | Corresponding_CDS | Y38A10A.5 | |||||||
Corresponding_transcript | Y38A10A.5.1 | ||||||||
Other_sequence (306) | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00065372 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00075498 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109263 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083111 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108767 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061159 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093398 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109554 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009306 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076768 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00080521 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109151 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108753 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109165 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061161 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093399 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108500 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083125 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109360 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055973 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083100 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109457 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055972 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083124 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110983 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00000682 | ||||||||
WBCnstr00010817 | |||||||||
WBCnstr00037266 | |||||||||
Construct_product | WBCnstr00006884 | ||||||||
WBCnstr00037266 | |||||||||
Regulate_expr_cluster | WBPaper00064957:crt-1(jvp1)_downregulated | ||||||||
WBPaper00064957:crt-1(jvp1)_upregulated | |||||||||
WBPaper00064957:crt-1(knu358)_downregulated | |||||||||
WBPaper00064957:crt-1(knu358)_upregulated | |||||||||
Antibody | WBAntibody00000408 | ||||||||
Microarray_results (24) | |||||||||
Expression_cluster (193) | |||||||||
Interaction | WBInteraction000001417 | ||||||||
WBInteraction000001419 | |||||||||
WBInteraction000001420 | |||||||||
WBInteraction000001843 | |||||||||
WBInteraction000002013 | |||||||||
WBInteraction000004658 | |||||||||
WBInteraction000005528 | |||||||||
WBInteraction000005529 | |||||||||
WBInteraction000005530 | |||||||||
WBInteraction000028946 | |||||||||
WBInteraction000029424 | |||||||||
WBInteraction000030188 | |||||||||
WBInteraction000030189 | |||||||||
WBInteraction000030190 | |||||||||
WBInteraction000030191 | |||||||||
WBInteraction000047673 | |||||||||
WBInteraction000051801 | |||||||||
WBInteraction000051808 | |||||||||
WBInteraction000051815 | |||||||||
WBInteraction000051816 | |||||||||
WBInteraction000051819 | |||||||||
WBInteraction000052755 | |||||||||
WBInteraction000157923 | |||||||||
WBInteraction000159743 | |||||||||
WBInteraction000160281 | |||||||||
WBInteraction000162259 | |||||||||
WBInteraction000162267 | |||||||||
WBInteraction000162370 | |||||||||
WBInteraction000162427 | |||||||||
WBInteraction000162428 | |||||||||
WBInteraction000162664 | |||||||||
WBInteraction000162668 | |||||||||
WBInteraction000165892 | |||||||||
WBInteraction000166060 | |||||||||
WBInteraction000166438 | |||||||||
WBInteraction000167678 | |||||||||
WBInteraction000167680 | |||||||||
WBInteraction000167685 | |||||||||
WBInteraction000167687 | |||||||||
WBInteraction000167689 | |||||||||
WBInteraction000167695 | |||||||||
WBInteraction000167828 | |||||||||
WBInteraction000173605 | |||||||||
WBInteraction000187788 | |||||||||
WBInteraction000195861 | |||||||||
WBInteraction000217899 | |||||||||
WBInteraction000218144 | |||||||||
WBInteraction000228197 | |||||||||
WBInteraction000238736 | |||||||||
WBInteraction000248182 | |||||||||
WBInteraction000256353 | |||||||||
WBInteraction000310345 | |||||||||
WBInteraction000335516 | |||||||||
WBInteraction000337733 | |||||||||
WBInteraction000346735 | |||||||||
WBInteraction000361430 | |||||||||
WBInteraction000361553 | |||||||||
WBInteraction000367930 | |||||||||
WBInteraction000416441 | |||||||||
WBInteraction000430569 | |||||||||
WBInteraction000431353 | |||||||||
WBInteraction000432223 | |||||||||
WBInteraction000455333 | |||||||||
WBInteraction000500988 | |||||||||
WBInteraction000501716 | |||||||||
WBInteraction000502119 | |||||||||
WBInteraction000502301 | |||||||||
WBInteraction000502302 | |||||||||
WBInteraction000502981 | |||||||||
WBInteraction000502982 | |||||||||
WBInteraction000502983 | |||||||||
WBInteraction000502984 | |||||||||
WBInteraction000502985 | |||||||||
WBInteraction000504662 | |||||||||
WBInteraction000517097 | |||||||||
WBInteraction000522002 | |||||||||
WBInteraction000534936 | |||||||||
WBInteraction000536460 | |||||||||
WBInteraction000536547 | |||||||||
WBInteraction000536747 | |||||||||
WBInteraction000536757 | |||||||||
WBInteraction000536759 | |||||||||
WBInteraction000536763 | |||||||||
WBInteraction000536764 | |||||||||
WBInteraction000536766 | |||||||||
WBInteraction000536767 | |||||||||
WBInteraction000536797 | |||||||||
WBInteraction000536802 | |||||||||
WBInteraction000539794 | |||||||||
WBInteraction000539845 | |||||||||
WBInteraction000540930 | |||||||||
WBInteraction000549891 | |||||||||
WBInteraction000550880 | |||||||||
WBInteraction000550945 | |||||||||
WBInteraction000553117 | |||||||||
WBInteraction000554021 | |||||||||
WBInteraction000555033 | |||||||||
WBInteraction000561305 | |||||||||
WBInteraction000562104 | |||||||||
WBInteraction000562573 | |||||||||
WBInteraction000563251 | |||||||||
WBInteraction000567983 | |||||||||
WBInteraction000569629 | |||||||||
WBInteraction000570799 | |||||||||
WBInteraction000571514 | |||||||||
WBInteraction000571524 | |||||||||
WBInteraction000572172 | |||||||||
WBInteraction000572663 | |||||||||
WBInteraction000572882 | |||||||||
WBInteraction000573377 | |||||||||
WBInteraction000577518 | |||||||||
WBInteraction000579532 | |||||||||
WBInteraction000579923 | |||||||||
WBInteraction000582527 | |||||||||
WBInteraction000582917 | |||||||||
WBInteraction000585840 | |||||||||
WBProcess | WBbiopr:00000046 | ||||||||
WBbiopr:00000079 | |||||||||
Map_info | Map | V | Position | -0.354153 | Error | 0.004638 | |||
Positive | Positive_clone | Y38A10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
ZL188 | |||||||||
Mapping_data | Multi_point | 4240 | |||||||
4964 | |||||||||
5324 | |||||||||
Pseudo_map_position | |||||||||
Reference (72) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |