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WormBase Tree Display for Gene: WBGene00006930

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Name Class

WBGene00006930SMapS_parentSequenceK07H8
IdentityVersion1
NameCGC_namevit-6Person_evidenceWBPerson71
Sequence_nameK07H8.6
Molecular_nameK07H8.6a
K07H8.6a.1
CE28594
K07H8.6c
CE18026
K07H8.6c.1
Other_nameCELE_K07H8.6Accession_evidenceNDBBX284604
Public_namevit-6
DB_infoDatabaseAceViewgene4J31
WormQTLgeneWBGene00006930
WormFluxgeneWBGene00006930
NDBlocus_tagCELE_K07H8.6
PanthergeneCAEEL|WormBase=WBGene00006930|UniProtKB=P18948
familyPTHR23345
NCBIgene177619
RefSeqproteinNM_001028103.4
NM_001028105.7
SwissProtUniProtAccP18948
TREEFAMTREEFAM_IDTF332911
UniProt_GCRPUniProtAccP18948
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvit
Allele (76)
Possibly_affected_byWBVar02158571
Legacy_information[C.elegansII] NMK. 5.1 kb transcript, specific to adult hermaphrodite intestine; encodes VIT180,180 kD protein distantly related to vit-5 etc.(30% identity); cleaved to yp115 and yp88. [Spieth and Blumenthal 1985; BL]
StrainWBStrain00047211
WBStrain00052773
RNASeq_FPKM (74)
GO_annotation00039640
00039641
00039642
00039643
00039644
00039645
00039646
00115044
00115045
Ortholog (56)
ParalogWBGene00006925Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006927Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006928Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006929Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionvit-6 encodes a vitellogenin precursor protein that is cleaved in the body cavity into two smaller yolk proteins, YP115 and YP88; in C. elegans, vitellogenin genes exhibit stage-, sex-, and tissue-specific expression being expressed exclusively in the adult hermaphrodite intestine.Paper_evidenceWBPaper00000808
WBPaper00001660
Curator_confirmedWBPerson1843
Date_last_updated28 Sep 2012 00:00:00
Automated_descriptionPredicted to enable lipid transporter activity. Involved in negative regulation of protein oxidation; negative regulation of reactive oxygen species biosynthetic process; and positive regulation of cholesterol import. Predicted to be located in extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDS (2)
Corresponding_CDS_historyK07H8.6b:wp270
Corresponding_transcriptK07H8.6a.1
K07H8.6c.1
Other_sequence (98)
Associated_feature (12)
Experimental_infoRNAi_result (13)
Expr_patternChronogram1489
Expr6355
Expr6356
Expr16165
Expr1013924
Expr1032945
Expr1153905
Expr2018004
Expr2036141
Drives_constructWBCnstr00002525
WBCnstr00004369
WBCnstr00034090
Construct_productWBCnstr00034090
Microarray_results (29)
Expression_cluster (330)
Interaction (248)
Map_infoMapIVPosition3.70045Error0.002391
PositivePositive_cloneK07H8Inferred_automaticallyFrom sequence, transcript, pseudogene data
LJSF9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (77)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene