WormBase Tree Display for Gene: WBGene00006930
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WBGene00006930 | SMap | S_parent | Sequence | K07H8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | vit-6 | Person_evidence | WBPerson71 | |||||
Sequence_name | K07H8.6 | ||||||||
Molecular_name | K07H8.6a | ||||||||
K07H8.6a.1 | |||||||||
CE28594 | |||||||||
K07H8.6c | |||||||||
CE18026 | |||||||||
K07H8.6c.1 | |||||||||
Other_name | CELE_K07H8.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | vit-6 | ||||||||
DB_info | Database | AceView | gene | 4J31 | |||||
WormQTL | gene | WBGene00006930 | |||||||
WormFlux | gene | WBGene00006930 | |||||||
NDB | locus_tag | CELE_K07H8.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006930|UniProtKB=P18948 | |||||||
family | PTHR23345 | ||||||||
NCBI | gene | 177619 | |||||||
RefSeq | protein | NM_001028103.4 | |||||||
NM_001028105.7 | |||||||||
SwissProt | UniProtAcc | P18948 | |||||||
TREEFAM | TREEFAM_ID | TF332911 | |||||||
UniProt_GCRP | UniProtAcc | P18948 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | vit | ||||||||
Allele (76) | |||||||||
Possibly_affected_by | WBVar02158571 | ||||||||
Legacy_information | [C.elegansII] NMK. 5.1 kb transcript, specific to adult hermaphrodite intestine; encodes VIT180,180 kD protein distantly related to vit-5 etc.(30% identity); cleaved to yp115 and yp88. [Spieth and Blumenthal 1985; BL] | ||||||||
Strain | WBStrain00047211 | ||||||||
WBStrain00052773 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00039640 | ||||||||
00039641 | |||||||||
00039642 | |||||||||
00039643 | |||||||||
00039644 | |||||||||
00039645 | |||||||||
00039646 | |||||||||
00115044 | |||||||||
00115045 | |||||||||
Ortholog (56) | |||||||||
Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006928 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | vit-6 encodes a vitellogenin precursor protein that is cleaved in the body cavity into two smaller yolk proteins, YP115 and YP88; in C. elegans, vitellogenin genes exhibit stage-, sex-, and tissue-specific expression being expressed exclusively in the adult hermaphrodite intestine. | Paper_evidence | WBPaper00000808 | |||||
WBPaper00001660 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 28 Sep 2012 00:00:00 | ||||||||
Automated_description | Predicted to enable lipid transporter activity. Involved in negative regulation of protein oxidation; negative regulation of reactive oxygen species biosynthetic process; and positive regulation of cholesterol import. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (2) | ||||||||
Corresponding_CDS_history | K07H8.6b:wp270 | ||||||||
Corresponding_transcript | K07H8.6a.1 | ||||||||
K07H8.6c.1 | |||||||||
Other_sequence (98) | |||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result (13) | ||||||||
Expr_pattern | Chronogram1489 | ||||||||
Expr6355 | |||||||||
Expr6356 | |||||||||
Expr16165 | |||||||||
Expr1013924 | |||||||||
Expr1032945 | |||||||||
Expr1153905 | |||||||||
Expr2018004 | |||||||||
Expr2036141 | |||||||||
Drives_construct | WBCnstr00002525 | ||||||||
WBCnstr00004369 | |||||||||
WBCnstr00034090 | |||||||||
Construct_product | WBCnstr00034090 | ||||||||
Microarray_results (29) | |||||||||
Expression_cluster (330) | |||||||||
Interaction (248) | |||||||||
Map_info | Map | IV | Position | 3.70045 | Error | 0.002391 | |||
Positive | Positive_clone | K07H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
LJSF9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference (77) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |