WormBase Tree Display for Gene: WBGene00000254
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| WBGene00000254 | SMap | S_parent | Sequence | K04F10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | bli-4 | Person_evidence | WBPerson261 | |||||
| Sequence_name | K04F10.4 | ||||||||
| Molecular_name (31) | |||||||||
| Other_name | let-77 | ||||||||
| kpc-4 | |||||||||
| CELE_K04F10.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | bli-4 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bli | ||||||||
| Reference_allele | WBVar00143617 | ||||||||
| Allele (169) | |||||||||
| Legacy_information | e937 : adult blistered especially head. ES3 (old adult) ME1. NA1. | ||||||||
| s90 : late larval lethal. NA1. | |||||||||
| Late larval lethal | |||||||||
| See also s90 | |||||||||
| [C.elegansII] e937 : adult blistered, especially head; penetrance 90%; unique Class I allele. ES3 (old adult) ME1. OA13: all other alleles result in late embryonic lethality, most are class II, fail to complemente937. e.g. h42, h199, h254, h1403. Also s90(pka let-77, class III allele, late larval lethal,complements e937 but not other alleles)Cloned: multiple alternatively spliced transcripts, encoding predicted endoproteases (KEX2/subtilisin class) with different C-termini,[Peters et al. 1991, Thacker et al. 1995, KR] | |||||||||
| Complementation_data | [Rose AM] complements bli-4(e937), does not complement lethal alleles of bli-4 | ||||||||
| Strain (496) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00000088 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001172 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002232 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017686 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | bli-4 encodes a variety of related subtilases (serine endoproteases of the KEX2/subtilisin class), with shared N-termini but varying C-termini, that are collectively required both for larval viability and for stable adhesion of the adult cuticle. | Paper_evidence | WBPaper00001439 | |||||
| WBPaper00002160 | |||||||||
| WBPaper00023862 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 30 Jul 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable serine-type endopeptidase activity. Involved in several processes, including chemosensory behavior; collagen and cuticulin-based cuticle development; and positive regulation of synaptic assembly at neuromuscular junction. Located in nucleus. Expressed in head; hypodermis; ventral cord neurons; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K04F10.4a | |||||||
| K04F10.4b | |||||||||
| K04F10.4c | |||||||||
| K04F10.4d | |||||||||
| K04F10.4e | |||||||||
| K04F10.4f | |||||||||
| K04F10.4g | |||||||||
| K04F10.4h | |||||||||
| K04F10.4i | |||||||||
| K04F10.4j | |||||||||
| Corresponding_CDS_history | K04F10.4e:wp250 | ||||||||
| Corresponding_transcript (11) | |||||||||
| Other_sequence (63) | |||||||||
| Associated_feature (36) | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr1543 | ||||||||
| Expr6325 | |||||||||
| Expr12812 | |||||||||
| Expr1013652 | |||||||||
| Expr1030164 | |||||||||
| Expr1153628 | |||||||||
| Expr2009630 | |||||||||
| Expr2027869 | |||||||||
| Drives_construct | WBCnstr00002667 | ||||||||
| WBCnstr00010329 | |||||||||
| WBCnstr00037625 | |||||||||
| Construct_product | WBCnstr00010329 | ||||||||
| WBCnstr00037625 | |||||||||
| Microarray_results (73) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (73) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | I | Position | 1.02135 | Error | 0.002014 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | qDf16 | |||||||
| nDp1 | |||||||||
| Positive_clone | K04F10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Negative | Outside_rearr | sDf4 | |||||||
| Mapping_data | 2_point (11) | ||||||||
| Multi_point (21) | |||||||||
| Pos_neg_data (48) | |||||||||
| Landmark_gene | |||||||||
| Reference (85) | |||||||||
| Remark | [Rose AM] complex complementation pattern | ||||||||
| kpc-4 was merged into this gene | |||||||||
| Method | Gene |
