WormBase Tree Display for Gene: WBGene00000088
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| WBGene00000088 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F32A7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | aex-5 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F32A7.6 | ||||||||
| Molecular_name | F32A7.6 | ||||||||
| F32A7.6.1 | |||||||||
| CE28554 | |||||||||
| Other_name | kpc-3 | ||||||||
| kpc-5 | |||||||||
| CELE_F32A7.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | aex-5 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aex | ||||||||
| Allele (170) | |||||||||
| Legacy_information | [Jim Thomas] Defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. | ||||||||
| See also sa23, sa41, sa42, sa43 | |||||||||
| [C.elegansII] sa23 : defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. OA3: sa41, sa42, sa43 (all similar) [Thomas 1990; JT] | |||||||||
| Strain | WBStrain00022773 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00001172 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000254 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002232 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017686 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | an ortholog of calcium-dependent serine endoproteinases, the kex2/subtilisin-like proprotein convertase that affects defecation cycle and anterior body contractions; and is expressed in all muscle cells except pharyngeal muscles. | Paper_evidence | WBPaper00004142 | |||||
| Curator_confirmed | WBPerson480 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables serine-type endopeptidase activity. Involved in several processes, including neuropeptide processing; positive regulation of synaptic assembly at neuromuscular junction; and positive regulation of transport. Located in extracellular space. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32A7.6 | |||||||
| Corresponding_CDS_history | F32A7.6:wp56 | ||||||||
| Corresponding_transcript | F32A7.6.1 | ||||||||
| Other_sequence | Oden_isotig22904 | ||||||||
| Acan_isotig14016 | |||||||||
| Tcir_isotig22927 | |||||||||
| CJC17003_1 | |||||||||
| Associated_feature | WBsf649782 | ||||||||
| WBsf220659 | |||||||||
| WBsf220660 | |||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern | Expr1010377 | ||||||||
| Expr1149978 | |||||||||
| Expr2009250 | |||||||||
| Expr2027487 | |||||||||
| Drives_construct | WBCnstr00037741 | ||||||||
| Construct_product | WBCnstr00005315 | ||||||||
| WBCnstr00007723 | |||||||||
| WBCnstr00037741 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction | WBInteraction000001570 | ||||||||
| WBInteraction000028975 | |||||||||
| WBInteraction000165455 | |||||||||
| WBInteraction000519683 | |||||||||
| WBInteraction000524187 | |||||||||
| WBInteraction000557476 | |||||||||
| WBInteraction000557477 | |||||||||
| WBInteraction000557478 | |||||||||
| WBProcess | WBbiopr:00000010 | ||||||||
| Map_info | Map | I | Position | 27.9582 | Error | 0.002256 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F32A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 1479 | |||||||
| 1697 | |||||||||
| Pos_neg_data | 4754 | ||||||||
| 4755 | |||||||||
| 4756 | |||||||||
| 4757 | |||||||||
| 4758 | |||||||||
| 4759 | |||||||||
| 4760 | |||||||||
| Reference (34) | |||||||||
| Remark | Sequence connection from [Thacker C] | ||||||||
| old_name kpc-5 becomes new_name aex-5 from [Thacker C]. | |||||||||
| Method | Gene |
