WormBase Tree Display for Variation: WBVar00143617

WBVar00143617 Name: Public_name: e937
    Other_name: K04F10.4d.2:c.1971+275_1971+3600del
      K04F10.4h.1:c.1971+275_*310del
      K04F10.4i.1:c.1971+275_1972-438del
      K04F10.4d.1:c.1971+275_1971+3600del
      K04F10.4b.1:c.1971+275_1971+3600del
      K04F10.4j.1:c.1971+275_1972-752del
      K04F10.4c.1:c.1971+275_1971+3600del
    HGVSg: CHROMOSOME_I:g.6345831_6349156del
  Sequence_details: SMap: S_parent: Sequence: K04F10
    Flanking_sequences: aaattgaaaaattgaaaaaatcaacaaaat taatttccctgaatggaatttcaaccaaat
    Mapping_target: K04F10
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain (502)
    Laboratory: CB
      CA
      UP
    Status: Live
  Affects: Gene: WBGene00200715
      WBGene00000254
    Transcript (12)
    Interactor: WBInteraction000537297
  Genetics: Interpolated_map_position: I 1.02091
    Mapping_data: In_2_point: 260
        261
        262
        5220
        6170
        6188
        6193
        6200
      In_multi_point (15)
      In_pos_neg_data (37)
    Marked_rearrangement: hT2[bli-4(e937) let-?(h661)]
      hT2[bli-4(e937) let-?(q782) qIs48]
      hT2[bli-4(e937) qIs48]
      hT2[bli-4(e937) unc-29(h1011)]
      hT2[bli-4(e937)]
  Description: Phenotype: WBPhenotype:0000025 Paper_evidence: WBPaper00001439
          WBPaper00005747
        Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
          WBPerson2987
        Remark: adult blistered, especially head; penetrance 90%; unique Class I allele. Easy to score (ES3) in older adults. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
          fully complemented by h754 and s90 Paper_evidence: WBPaper00001439
            Curator_confirmed: WBPerson712
          Table 1 Paper_evidence: WBPaper00005747
            Curator_confirmed: WBPerson2987
        Penetrance: High: 90% Person_evidence: WBPerson261
              Curator_confirmed: WBPerson712
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Person_evidence: WBPerson261
                Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: kaIs12 [col-19::gfp] Paper_evidence: WBPaper00005747
              Curator_confirmed: WBPerson2987
        Ease_of_scoring: ES3_Easy_to_score: Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0000351 Paper_evidence: WBPaper00002829
        Curator_confirmed: WBPerson712
        Remark: animals arrest during hatching Paper_evidence: WBPaper00002829
            Curator_confirmed: WBPerson712
        Recessive: Paper_evidence: WBPaper00002829
          Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: dpy-5 unc-13; sDp2 Paper_evidence: WBPaper00002829
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000505 Paper_evidence: WBPaper00001328
        Curator_confirmed: WBPerson712
        Remark: Males are not Ram. Paper_evidence: WBPaper00001328
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0006941 PATO:0000460 Paper_evidence: WBPaper00001328
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000056 PATO:0000460 Paper_evidence: WBPaper00001328
                Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 20C Paper_evidence: WBPaper00001328
              Curator_confirmed: WBPerson712
          Genotype: him-5(e1490) Paper_evidence: WBPaper00001328
              Curator_confirmed: WBPerson712
      WBPhenotype:0000961 Paper_evidence: WBPaper00005747
        Curator_confirmed: WBPerson2987
        Remark: Table 1 Paper_evidence: WBPaper00005747
            Curator_confirmed: WBPerson2987
        Phenotype_assay: Genotype: kaIs12 [col-19::gfp] Paper_evidence: WBPaper00005747
              Curator_confirmed: WBPerson2987
      WBPhenotype:0001412 Paper_evidence: WBPaper00005747
        Curator_confirmed: WBPerson2987
        Remark: Table 1 Paper_evidence: WBPaper00005747
            Curator_confirmed: WBPerson2987
        Phenotype_assay: Genotype: kaIs12 [col-19::gfp] Paper_evidence: WBPaper00005747
              Curator_confirmed: WBPerson2987
      WBPhenotype:0001517 Paper_evidence: WBPaper00005747
        Curator_confirmed: WBPerson2987
        Remark: Table 1 Paper_evidence: WBPaper00005747
            Curator_confirmed: WBPerson2987
        Phenotype_assay: Genotype: kaIs12 [col-19::gfp] Paper_evidence: WBPaper00005747
              Curator_confirmed: WBPerson2987
  Reference (30)
  Remark: e937 is a 3325bp deletion Paper_evidence: WBPaper00028453
    Allele sequenced by Andrew Chisholm
    Variation stub/paper connection generated from the May 2021 NN VFP dataset.
    Created by WBPerson51134 from the NN_VFP_triage_pipeline
  Method: Deletion_allele