WormBase Tree Display for Gene: WBGene00006771
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WBGene00006771 | SMap | S_parent | Sequence | Y71G12B | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | tln-1 | Person_evidence | WBPerson110 | |||
Sequence_name | Y71G12B.11 | ||||||
Molecular_name (21) | |||||||
Other_name | unc-35 | Person_evidence | WBPerson261 | ||||
Ce Talin | Paper_evidence | WBPaper00036199 | |||||
CELE_Y71G12B.11 | Accession_evidence | NDB | BX284601 | ||||
Public_name | tln-1 | ||||||
DB_info | Database | WormFlux | gene | WBGene00006771 | |||
NDB | locus_tag | CELE_Y71G12B.11 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006771|UniProtKB=G5EGK1 | |||||
family | PTHR19981 | ||||||
NCBI | gene | 171736 | |||||
RefSeq | protein | NM_001262110.3 | |||||
NM_001313547.3 | |||||||
NM_001373653.2 | |||||||
NM_001313545.3 | |||||||
NM_001392973.1 | |||||||
NM_058485.8 | |||||||
NM_001381251.1 | |||||||
TREEFAM | TREEFAM_ID | TF314677 | |||||
TrEMBL | UniProtAcc | G4S9F5 | |||||
G5EGK1 | |||||||
Q95XN3 | |||||||
A0A0K3ATT6 | |||||||
A0A0K3AQU9 | |||||||
W6SBK6 | |||||||
A0A0K3AUD9 | |||||||
UniProt_GCRP | UniProtAcc | G5EGK1 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Acquires_merge | WBGene00022151 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tln | ||||||
Reference_allele | WBVar00143069 | ||||||
Allele (384) | |||||||
Possibly_affected_by | WBVar02158438 | ||||||
Legacy_information | e259 : loopy irregular forward movement poor backing; active; slightly thin. ES2. ME2. NA1. | ||||||
[C.elegansII] e259 : loopy irregular forward movement, poor backing; active; slightly thin. ES2. ME2. NA1. [Brenner 1974] | |||||||
Strain | WBStrain00027032 | ||||||
WBStrain00032143 | |||||||
WBStrain00005542 | |||||||
WBStrain00006169 | |||||||
WBStrain00047172 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (21) | |||||||
Ortholog (49) | |||||||
Paralog | WBGene00006836 | ||||||
Structured_description | Automated_description | Predicted to enable integrin binding activity. Involved in negative regulation of epidermal growth factor receptor signaling pathway; regulation of vulval development; and vulval cell fate specification. Located in basement membrane; contractile fiber; and lateral plasma membrane. Expressed in several structures, including Psub4; Z2; Z3; distal tip cell; and vulval cell. Is an ortholog of human TLN2 (talin 2). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y71G12B.11a | |||||
Y71G12B.11b | |||||||
Y71G12B.11c | |||||||
Y71G12B.11d | |||||||
Y71G12B.11e | |||||||
Y71G12B.11f | |||||||
Y71G12B.11g | |||||||
Corresponding_transcript | Y71G12B.11a.1 | ||||||
Y71G12B.11b.1 | |||||||
Y71G12B.11c.1 | |||||||
Y71G12B.11d.1 | |||||||
Y71G12B.11e.1 | |||||||
Y71G12B.11f.1 | |||||||
Y71G12B.11g.1 | |||||||
Other_sequence | JI481552.1 | ||||||
PTC03592_1 | |||||||
MP02104 | |||||||
Tcir_isotig08682 | |||||||
PT04127 | |||||||
Dviv_isotig25387 | |||||||
CR08990 | |||||||
RS05963 | |||||||
FG584437.1 | |||||||
EX560976.1 | |||||||
MCC00614_1 | |||||||
SRC00637_1 | |||||||
EX558944.1 | |||||||
Hbac_isotig03931 | |||||||
FG582500.1 | |||||||
MC00935 | |||||||
FK802390.1 | |||||||
Tcol_isotig20198 | |||||||
CRC10720_1 | |||||||
Oden_isotig18960 | |||||||
MJC00289_1 | |||||||
Name_isotig03977 | |||||||
FC548773.1 | |||||||
HCC06953_1 | |||||||
HC05400 | |||||||
HG07244 | |||||||
MHC00177_1 | |||||||
GR14021 | |||||||
ACC22993_1 | |||||||
MH00319 | |||||||
FC553814.1 | |||||||
ES564867.1 | |||||||
MJ01282 | |||||||
Dviv_isotig09068 | |||||||
Tcir_isotig27128 | |||||||
Tcol_isotig21941 | |||||||
Tcol_isotig08228 | |||||||
Dviv_isotig06236 | |||||||
CR08991 | |||||||
ES568491.1 | |||||||
SS01338 | |||||||
HGC07819_1 | |||||||
Oden_isotig19281 | |||||||
FC809788.1 | |||||||
Dviv_isotig09071 | |||||||
CBC02384_1 | |||||||
TSC13394_1 | |||||||
ACC04929_1 | |||||||
Acan_isotig20203 | |||||||
EX541774.1 | |||||||
MHC00799_1 | |||||||
GRC03291_1 | |||||||
SSC03066_1 | |||||||
PPC16859_1 | |||||||
JI163943.1 | |||||||
Dviv_isotig35485 | |||||||
TMC00409_1 | |||||||
PPC07157_1 | |||||||
JI163904.1 | |||||||
RSC00707_1 | |||||||
Dviv_isotig15749 | |||||||
Tcol_isotig08229 | |||||||
ACC29507_1 | |||||||
FC542677.1 | |||||||
AE03702 | |||||||
EX547103.1 | |||||||
MH00152 | |||||||
Dviv_isotig09069 | |||||||
EX540869.1 | |||||||
AYC02930_1 | |||||||
CBC05771_1 | |||||||
JI482458.1 | |||||||
GP01654 | |||||||
Dviv_isotig09070 | |||||||
JI477993.1 | |||||||
TSC07430_1 | |||||||
Dviv_isotig15750 | |||||||
Tcol_isotig24020 | |||||||
CB013256.1 | |||||||
FC545828.1 | |||||||
Associated_feature (33) | |||||||
Experimental_info | RNAi_result (50) | ||||||
Expr_pattern | Expr1325 | ||||||
Expr11786 | |||||||
Expr13258 | |||||||
Expr1022326 | |||||||
Expr1039757 | |||||||
Expr1161614 | |||||||
Expr2017418 | |||||||
Expr2035557 | |||||||
Drives_construct | WBCnstr00042808 | ||||||
Microarray_results (50) | |||||||
Expression_cluster (203) | |||||||
Interaction (21) | |||||||
Map_info | Map | I | Position | -13.1715 | |||
Well_ordered | |||||||
Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | 2_point | 3 | |||||
258 | |||||||
7147 | |||||||
7168 | |||||||
Multi_point | 2 | ||||||
348 | |||||||
350 | |||||||
3659 | |||||||
3660 | |||||||
3932 | |||||||
5723 | |||||||
Pos_neg_data | 526 | ||||||
3764 | |||||||
6288 | |||||||
Reference (24) | |||||||
Method | Gene |