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WormBase Tree Display for Gene: WBGene00006876

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Name Class

WBGene00006876EvidenceCGC_data_submission
SMapS_parentSequenceCHROMOSOME_I
IdentityVersion5
Name (5)
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
204 Jun 2007 09:44:12WBPerson1983EventAcquires_mergeWBGene00009970
312 Jul 2011 11:57:39WBPerson2970EventAcquires_mergeWBGene00044919
Name_changeOther_namemig-31
421 Nov 2019 16:12:41WBPerson4025EventAcquires_mergeWBGene00011384
521 Nov 2019 16:12:41WBPerson4025EventAcquires_mergeWBGene00011385
Acquires_mergeWBGene00009970
WBGene00044919
WBGene00011384
WBGene00011385
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
Reference_alleleWBVar00143414
Allele (1092)
Legacy_informatione698 : degenerate head bent dorsally or ventrally penetrance 50%; generally poor growth; adult male tail invariably thin fan and rays reduced in size. ES3/1 ME0. NA1.
See also e698
[C.elegansII] e698 : degenerate head, bent dorsally or ventrally; penetrance 50%; generally poor growth; adult male tail invariably thin fan and rays reduced in size; Mua (defective muscle attachment). ES3/1 ME0. NA1. [Hodgkin 1974; NJ]
StrainWBStrain00026573
WBStrain00026574
WBStrain00035519
WBStrain00035910
WBStrain00004199
WBStrain00007880
WBStrain00007881
RNASeq_FPKM (74)
GO_annotation (25)
OrthologWBGene00035945Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00140869Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00070353Caenorhabditis remaneiFrom_analysisOMA
WBGene00137781Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00129866Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00070349Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00153822Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00070348Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00227900Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9715Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2355Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g2356Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g2357Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20886Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3877Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g3878Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g3879Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15075Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g5015Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5016Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5017Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1739Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g1740Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5912Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9370Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_I.g3484Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3485Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold623.g6303Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold623.g6304Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold623.g6305Caenorhabditis tropicalisFrom_analysisWormBase-Compara
FL83_11508Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_11510Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003222Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05860Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05861Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18509Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18510Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10044610Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11070Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00128436Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00132165Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00237884Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00097822Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263961Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288451Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0013733Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3606Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030131-3399Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:1090Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:13664Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:108559Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
MGI:104627Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306566Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306057Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
Paralog (13)
Structured_descriptionConcise_descriptionvab-10 encodes, by alternative splicing, two spectraplakins (VAB-10A and VAB-10B) that are jointly required for mechanical resilience of the epidermis under strain by the contraction of actin microfilaments mechanically linked to fibrous organelles (FOs); VAB-10A/B are, accordingly, required for elongation during embryonic morphogenesis; VAB-10A has C-terminal plectin repeats while VAB-10B has spectrin repeats; VAB-10A is required to keep the epidermis and extracellular matrix attached via FOs, while VAB-10B is required to keep the apical and basal epidermal plasma membranes connected during morphogenesis; vab-10a and vab-10b mutations complement one another; vab-10 is orthologous to human BPAG1 (dystonin or MACF2, OMIM:113810, encoding an autoantigen of bullous pemphigoid blistering disease) and dJ562N20.1 (MACF1), and to Drosophila SHORT STOP.Paper_evidenceWBPaper00000608
WBPaper00003943
WBPaper00005913
WBPaper00013151
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable actin filament binding activity and structural molecule activity. Involved in epidermis morphogenesis. Located in apical plasma membrane; basal plasma membrane; and hemidesmosome. Expressed in several structures, including gonad; intestinal lumen; nerve ring; pharynx; and vulval cell. Human ortholog(s) of this gene implicated in epidermolysis bullosa simplex; hereditary sensory and autonomic neuropathy type 6; and lissencephaly 9 with complex brainstem malformation. Is an ortholog of human DST (dystonin).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070151Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1090)
DOID:0112228Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13664)
DOID:4644Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1090)
Molecular_infoCorresponding_CDS (14)
Corresponding_CDS_historyZK1151.1:wp100
ZK1151.1a:wp274
ZK1151.1b:wp274
ZK1151.1c:wp274
ZK1151.1d:wp274
ZK1151.1e:wp274
ZK1151.1f:wp274
ZK1151.1g:wp274
Corresponding_transcript (14)
Other_sequence (147)
Associated_feature (93)
Experimental_infoRNAi_result (65)
Expr_pattern (23)
Construct_productWBCnstr00007874
WBCnstr00007875
WBCnstr00007914
WBCnstr00008020
WBCnstr00009003
WBCnstr00015611
WBCnstr00016037
WBCnstr00039942
AntibodyWBAntibody00000627
WBAntibody00002122
WBAntibody00002270
WBAntibody00002271
WBAntibody00002272
WBAntibody00002818
Microarray_results (115)
Expression_cluster (290)
Interaction (156)
WBProcessWBbiopr:00000006
WBbiopr:00000008
Map_infoMapIPosition9.6157Error0.240987
Well_ordered
PositivePositive_cloneZK1151Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point646
647
Multi_point566
567
4467
5678
Reference (66)
RemarkSequence connection from [Hapiak V, Plenefisch JD]
MethodGene