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WormBase Tree Display for Gene: WBGene00006771

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Name Class

WBGene00006771SMapS_parentSequenceY71G12B
IdentityVersion3
NameCGC_nametln-1Person_evidenceWBPerson110
Sequence_nameY71G12B.11
Molecular_name (21)
Other_nameunc-35Person_evidenceWBPerson261
Ce TalinPaper_evidenceWBPaper00036199
CELE_Y71G12B.11Accession_evidenceNDBBX284601
Public_nametln-1
DB_infoDatabaseWormFluxgeneWBGene00006771
NDBlocus_tagCELE_Y71G12B.11
PanthergeneCAEEL|WormBase=WBGene00006771|UniProtKB=G5EGK1
familyPTHR19981
NCBIgene171736
RefSeqproteinNM_001262110.3
NM_001313547.3
NM_001373653.2
NM_001313545.3
NM_001392973.1
NM_058485.8
NM_001381251.1
TREEFAMTREEFAM_IDTF314677
TrEMBLUniProtAccG4S9F5
G5EGK1
Q95XN3
A0A0K3ATT6
A0A0K3AQU9
W6SBK6
A0A0K3AUD9
UniProt_GCRPUniProtAccG5EGK1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:42WBPerson1971EventImportedInitial conversion from geneace
212 Aug 2011 14:19:05WBPerson2970Name_changeCGC_nametln-1
Other_nameunc-35
331 Jan 2013 09:04:22WBPerson2970EventAcquires_mergeWBGene00022151
Acquires_mergeWBGene00022151
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtln
Reference_alleleWBVar00143069
Allele (384)
Possibly_affected_byWBVar02158438
Legacy_informatione259 : loopy irregular forward movement poor backing; active; slightly thin. ES2. ME2. NA1.
[C.elegansII] e259 : loopy irregular forward movement, poor backing; active; slightly thin. ES2. ME2. NA1. [Brenner 1974]
StrainWBStrain00027032
WBStrain00032143
WBStrain00005542
WBStrain00006169
WBStrain00047172
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00040776Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00060491Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00193349Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193815Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00212350Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00134500Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00227315Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9788Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13050Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g568Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7431Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6641Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22707Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1422Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21634Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13078Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12087Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g19837Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20921Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00141.g5450Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00141.g5451Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00709.g13594Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08322.g21438Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13268.g24161Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tln-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8483Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8506Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00312.g9227Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00312.g9229Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17350Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001174Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06841Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11041Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10312000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g232Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237145Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00099205Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260683Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292434Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0260442Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-031002-48Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040724-263Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-130325-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:11845Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:15447Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1099832Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1917799Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306247Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1565416Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00006836
Structured_descriptionAutomated_descriptionPredicted to enable integrin binding activity. Involved in negative regulation of epidermal growth factor receptor signaling pathway; regulation of vulval development; and vulval cell fate specification. Located in basement membrane; contractile fiber; and lateral plasma membrane. Expressed in several structures, including Psub4; Z2; Z3; distal tip cell; and vulval cell. Is an ortholog of human TLN2 (talin 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY71G12B.11a
Y71G12B.11b
Y71G12B.11c
Y71G12B.11d
Y71G12B.11e
Y71G12B.11f
Y71G12B.11g
Corresponding_transcriptY71G12B.11a.1
Y71G12B.11b.1
Y71G12B.11c.1
Y71G12B.11d.1
Y71G12B.11e.1
Y71G12B.11f.1
Y71G12B.11g.1
Other_sequence (80)
Associated_feature (33)
Experimental_infoRNAi_resultWBRNAi00091674Inferred_automaticallyRNAi_primary
WBRNAi00022499Inferred_automaticallyRNAi_primary
WBRNAi00026944Inferred_automaticallyRNAi_primary
WBRNAi00026943Inferred_automaticallyRNAi_primary
WBRNAi00099837Inferred_automaticallyRNAi_primary
WBRNAi00080633Inferred_automaticallyRNAi_primary
WBRNAi00004819Inferred_automaticallyRNAi_primary
WBRNAi00094175Inferred_automaticallyRNAi_primary
WBRNAi00058197Inferred_automaticallyRNAi_primary
WBRNAi00101073Inferred_automaticallyRNAi_primary
WBRNAi00100886Inferred_automaticallyRNAi_primary
WBRNAi00026941Inferred_automaticallyRNAi_primary
WBRNAi00071109Inferred_automaticallyRNAi_primary
WBRNAi00026939Inferred_automaticallyRNAi_primary
WBRNAi00091770Inferred_automaticallyRNAi_primary
WBRNAi00108535Inferred_automaticallyRNAi_primary
WBRNAi00109626Inferred_automaticallyRNAi_primary
WBRNAi00091854Inferred_automaticallyRNAi_primary
WBRNAi00063785Inferred_automaticallyRNAi_primary
WBRNAi00065776Inferred_automaticallyRNAi_primary
WBRNAi00004818Inferred_automaticallyRNAi_primary
WBRNAi00100512Inferred_automaticallyRNAi_primary
WBRNAi00083948Inferred_automaticallyRNAi_primary
WBRNAi00075457Inferred_automaticallyRNAi_primary
WBRNAi00109432Inferred_automaticallyRNAi_primary
WBRNAi00114825Inferred_automaticallyRNAi_primary
WBRNAi00099433Inferred_automaticallyRNAi_primary
WBRNAi00065875Inferred_automaticallyRNAi_primary
WBRNAi00091734Inferred_automaticallyRNAi_primary
WBRNAi00085383Inferred_automaticallyRNAi_primary
WBRNAi00099635Inferred_automaticallyRNAi_primary
WBRNAi00071886Inferred_automaticallyRNAi_primary
WBRNAi00099231Inferred_automaticallyRNAi_primary
WBRNAi00109335Inferred_automaticallyRNAi_primary
WBRNAi00026940Inferred_automaticallyRNAi_primary
WBRNAi00091719Inferred_automaticallyRNAi_primary
WBRNAi00026942Inferred_automaticallyRNAi_primary
WBRNAi00091704Inferred_automaticallyRNAi_primary
WBRNAi00001775Inferred_automaticallyRNAi_primary
WBRNAi00100138Inferred_automaticallyRNAi_primary
WBRNAi00109238Inferred_automaticallyRNAi_primary
WBRNAi00117138Inferred_automaticallyRNAi_primary
WBRNAi00100325Inferred_automaticallyRNAi_primary
WBRNAi00083954Inferred_automaticallyRNAi_primary
WBRNAi00100699Inferred_automaticallyRNAi_primary
WBRNAi00109529Inferred_automaticallyRNAi_primary
WBRNAi00091689Inferred_automaticallyRNAi_primary
WBRNAi00091853Inferred_automaticallyRNAi_primary
WBRNAi00091749Inferred_automaticallyRNAi_primary
WBRNAi00116157Inferred_automaticallyRNAi_primary
Expr_patternExpr1325
Expr11786
Expr13258
Expr1022326
Expr1039757
Expr1161614
Expr2017418
Expr2035557
Drives_constructWBCnstr00042808
Microarray_results (50)
Expression_cluster (203)
Interaction (21)
Map_infoMapIPosition-13.1715
Well_ordered
PositivePositive_cloneY71G12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point3
258
7147
7168
Multi_point2
348
350
3659
3660
3932
5723
Pos_neg_data526
3764
6288
Reference (24)
MethodGene