WormBase Tree Display for Gene: WBGene00220165

WBGene00220165 SMap: S_parent: Sequence: Y47G6A
  Identity: Version: 1
    Name: Sequence_name: Y47G6A.36
      Molecular_name: Y47G6A.36
      Other_name: CELE_Y47G6A.36 Accession_evidence: NDB BX284601
      Public_name: Y47G6A.36
    DB_info: Database: NDB locus_tag CELE_Y47G6A.36
        NCBI gene 24105113
        RefSeq protein NR_101539.1
        RNAcentral URSid URS00002AFBB9
    Species: Caenorhabditis elegans
    History: Version_change: 1 13 Aug 2012 10:27:15 WBPerson1983 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001263
    Allele: WBVar01342597
      WBVar00310701
      WBVar00626524
      WBVar00626525
      WBVar01499786
      WBVar01499985
      WBVar00330553
    RNASeq_FPKM (74)
    Structured_description: Automated_description: Enriched in germ line and head mesodermal cell based on RNA-seq studies. Is affected by several genes including rrf-3; cep-1; and sma-2 based on RNA-seq and microarray studies. Is affected by seven chemicals including Tunicamycin; paraquat; and Chlorpyrifos based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_transcript: Y47G6A.36
  Experimental_info: RNAi_result (18)
    Microarray_results: SMD_Y47G6A_247.G
      186980_at
      A_12_P105516
      GPL21109_Y47G6A.36
      GPL3518_CE24359
      GPL9450_Y47G6A.15
      cea2.i.06026
    Expression_cluster: WBPaper00045380:cep-1(gk138)_upregulated_normal
      WBPaper00045521:Spermatogenic
      WBPaper00045971:tunicamycin_upregulated_control
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_noncoding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065841:1_2
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:7_3
      WBPaper00065841:18_0
      WBPaper00065841:38_0
      WBPaper00065841:38_1
      WBPaper00065841:38_2
      WBPaper00065841:38_3
      WBPaper00065841:61_0
      WBPaper00065841:102_0
      WBPaper00065841:110_0
      WBPaper00065841:110_1
      WBPaper00065841:138_0
      WBPaper00065841:143_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_1
      WBPaper00032948:StarveUp2
      WBPaper00033101:spr-5_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_downregulated
  Map_info: Positive: Positive_clone: Y47G6A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I -3.22067
  Remark: [120808 pad] Created as part of an ncRNA dataset from Xiao et al. 2011 Paper_evidence: WBPaper00040814
  Method: Gene