WormBase Tree Display for Gene: WBGene00044787

WBGene00044787 SMap: S_parent: Sequence: C54D10
  Identity: Version: 2
    Name: CGC_name: pals-36 Person_evidence: WBPerson260
      Sequence_name: C54D10.12
      Molecular_name: C54D10.12
      Other_name: CELE_C54D10.12 Accession_evidence: NDB BX284605
      Public_name: pals-36
    DB_info: Database: WormFlux gene WBGene00044787
        NDB locus_tag CELE_C54D10.12
        NCBI gene 4363107
    Species: Caenorhabditis elegans
    History: Version_change: 1 16 Mar 2006 12:31:16 WBPerson4025 Event: Created
        2 26 Oct 2016 09:41:00 WBPerson2970 Name_change: CGC_name: pals-36
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: pals
    Allele (46)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP5557
      CEOP550
    Ortholog: WBGene00041840 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00142109 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00161337 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00061021 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00072363 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00084188 Caenorhabditis remanei From_analysis: TreeFam
    Paralog: WBGene00008301 Caenorhabditis elegans From_analysis: Inparanoid_8
      WBGene00008302 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012091 Caenorhabditis elegans From_analysis: Inparanoid_8
      WBGene00013294 Caenorhabditis elegans From_analysis: Inparanoid_8
    Structured_description: Automated_description: Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: C54D10.12:wp195
      C54D10.12:wp256
    Corresponding_pseudogene: C54D10.12
  Experimental_info: Expr_pattern: Expr1016902
      Expr1147104
    Microarray_results (11)
    Expression_cluster: WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00045257:bar-1(ga80)_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055137:S.maltophilia_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057347:nhr-14(tm1473)_upreglated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00061040:FW1256_downregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062354:H.zoospora_12h_regulated
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
  Map_info: Positive: Positive_clone: C54D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 4.21735
  Method: Gene