WormBase Tree Display for Gene: WBGene00044001

WBGene00044001 SMap: S_parent: Sequence: C09G4
  Identity: Version: 1
    Name: Sequence_name: C09G4.4
      Molecular_name (3)
      Other_name: CELE_C09G4.4 Accession_evidence: NDB BX284604
      Public_name: C09G4.4
    DB_info: Database: AceView gene 4J277
        WormFlux gene WBGene00044001
        NDB locus_tag CELE_C09G4.4
        NCBI gene 3565561
        RefSeq protein NM_001392352.1
        TrEMBL UniProtAcc G5ED81
        UniProt_GCRP UniProtAcc G5ED81
    Species: Caenorhabditis elegans
    History: Version_change: 1 11 Nov 2004 15:25:53 WBPerson1867 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (26)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4294
    Ortholog (16)
    Structured_description: Automated_description: Enriched in several structures, including ABalaapppa; ABalapaapa; GLR; ciliated neurons; and germ line based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on tiling array; RNA-seq; and microarray studies. Is affected by eight chemicals including Rifampin; Psoralens; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C09G4.4
    Corresponding_transcript: C09G4.4.1
    Other_sequence: CJC07796_1
    Associated_feature: WBsf228694
  Experimental_info: RNAi_result (23)
    Expr_pattern: Expr1016704
      Expr1040157
      Expr1144302
      Expr2000665
      Expr2018887
    Drives_construct: WBCnstr00023812
    Construct_product: WBCnstr00023812
    Microarray_results (26)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
      WBPaper00059224:tph-1(mg280)_downregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059598:HeatShock_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:ADL_parent
      WBPaper00061340:AMso_parent
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:Ciliated_non_amphid_neuron
      WBPaper00061340:DVC_parent
      WBPaper00061340:GLR
      WBPaper00061340:I1_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:M1_parent
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061340:Neuroblast_ASE_ASJ_AUA
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Neuroblast_IL1_IL2
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:OLQ_grandparent
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:Parent_of_exc_gland_AVK
      WBPaper00061340:Parent_of_K_Kprime
      WBPaper00061340:PLM_ALN_grandparent
      WBPaper00061340:PLM_ALN_great_grandparent
      WBPaper00061340:PVQ_parent
      WBPaper00061340:RIA_parent
      WBPaper00061340:RIC_parent
      WBPaper00061340:RIM_parent
      WBPaper00062056:dpl-1(n2994)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-36(we31)_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064158:xpo-1(RNAi)_downregulated
      WBPaper00064494:postdauer_upregulated_AWA
      WBPaper00064716:paraquat_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_3_2
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034739:N2lessDR1350
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00040426:CYE-1_CDK-2AF_upregulated
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_SM
      [cgc5976]:class_2
      [cgc6390]:Cluster_E
      [cgc6390]:Cluster_F
      [cgc6390]:oogenesis-enriched
    Interaction (19)
  Map_info: Positive: Positive_clone: C09G4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.88405
  Method: Gene