WormBase Tree Display for Gene: WBGene00021000

WBGene00021000 SMap: S_parent: Sequence: W03F9
  Identity: Version: 1
    Name: Sequence_name: W03F9.2
      Molecular_name: W03F9.2a
        W03F9.2a.1
        CE14526
        W03F9.2b
      Other_name: CELE_W03F9.2 Accession_evidence: NDB BX284605
      Public_name: W03F9.2
    DB_info: Database: AceView gene 5A606
        WormQTL gene WBGene00021000
        WormFlux gene WBGene00021000
        NDB locus_tag CELE_W03F9.2
        NCBI gene 178541
        RefSeq protein NR_132471.1
            NM_070738.4
        TREEFAM TREEFAM_ID TF343047
        TrEMBL UniProtAcc H2L0N7
        UniProt_GCRP UniProtAcc H2L0N7
        RNAcentral URSid URS00008578B1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (36)
    RNASeq_FPKM (74)
    GO_annotation: 00023218
      00023219
    Ortholog (18)
    Paralog: WBGene00043051 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABalappaap; ABalppppppa; ABplpaaaaa; ABplpaaaap; and head mesodermal cell based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including rotenone; mianserin; and stavudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W03F9.2a
    Corresponding_CDS_history: W03F9.2b:wp248
    Corresponding_transcript: W03F9.2b
      W03F9.2a.1
    Other_sequence (2)
    Associated_feature: WBsf668700
      WBsf978531
      WBsf233237
      WBsf233238
    Gene_product_binds (13391)
    Transcription_factor: WBTranscriptionFactor000752
  Experimental_info: RNAi_result: WBRNAi00009248 Inferred_automatically: RNAi_primary
      WBRNAi00001942 Inferred_automatically: RNAi_primary
      WBRNAi00036240 Inferred_automatically: RNAi_primary
      WBRNAi00062055 Inferred_automatically: RNAi_primary
      WBRNAi00026471 Inferred_automatically: RNAi_primary
      WBRNAi00071513 Inferred_automatically: RNAi_primary
      WBRNAi00054708 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017404
      Expr1039151
      Expr1158246
      Expr1200066
      Expr2006736
      Expr2024956
    Drives_construct: WBCnstr00024736
    Construct_product: WBCnstr00016712
      WBCnstr00024736
    Microarray_results (28)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_12h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045486:starvation_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046338:intestine_unique
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_8
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
      WBPaper00057162:meg-3_meg-4_upregulated_sRNA
      WBPaper00057254:MWCNT_upregulated_mRNA
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:ASE_parent
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:RID_parent
      WBPaper00061527:pbs-3_18439-rpn-5
      WBPaper00061527:swsn-2.2_209-ets-6
      WBPaper00061753:csr-1(tor159)_upregulated_20C
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_13
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00034739:N2moreDR1350
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:intrinsic
    Interaction: WBInteraction000526111
      WBInteraction000526163
      WBInteraction000527649
      WBInteraction000528064
      WBInteraction000548618
      WBInteraction000548727
  Map_info: Positive: Positive_clone: W03F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -20.0117
  Method: Gene