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WormBase Tree Display for Gene: WBGene00020847

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Name Class

WBGene00020847SMapS_parentSequenceT27A10
IdentityVersion3
NameCGC_namecgr-1Person_evidenceWBPerson341
Sequence_nameT27A10.7
Molecular_nameT27A10.7
T27A10.7.1
CE37679
Other_nametag-133Person_evidenceWBPerson201
CELE_T27A10.7Accession_evidenceNDBBX284606
Public_namecgr-1
DB_infoDatabase (10)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
204 Nov 2004 16:11:20WBPerson2970Name_changeCGC_namecgr-1
306 Oct 2005 10:08:13WBPerson2970EventAcquires_mergeWBGene00006480
Name_changeOther_nametag-133
Acquires_mergeWBGene00006480
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcgr
Allele (53)
StrainWBStrain00027266
WBStrain00031726
WBStrain00035793
WBStrain00040578
WBStrain00040579
WBStrain00040580
RNASeq_FPKM (74)
GO_annotation00076548
00076549
Ortholog (31)
Paralog (11)
Structured_descriptionAutomated_descriptionLocated in cytoplasm. Expressed in intestine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST27A10.7
Corresponding_CDS_historyT27A10.7:wp109
T27A10.7:wp133
Corresponding_transcriptT27A10.7.1
Other_sequence (16)
Associated_featureWBsf653852
WBsf670346
WBsf670347
WBsf670348
WBsf237191
WBsf237192
Experimental_infoRNAi_resultWBRNAi00054258Inferred_automaticallyRNAi_primary
WBRNAi00033522Inferred_automaticallyRNAi_primary
WBRNAi00062668Inferred_automaticallyRNAi_primary
WBRNAi00019300Inferred_automaticallyRNAi_primary
Expr_patternExpr3745
Expr1010808
Expr1157805
Expr2009945
Expr2028185
Drives_constructWBCnstr00011642
WBCnstr00024840
Construct_productWBCnstr00011642
WBCnstr00024840
Microarray_results (18)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049626:UNC-75_target
WBPaper00049905:Age_variant_expression
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00054913:AKIR-1_interacting_protein
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:Cold_downregulated_protein
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00059254:CSR-1_interacting
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059763:neuron_acr-2(n2420gf)_regulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00059895:wounding_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061340:AVJ
WBPaper00061340:mc2
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:F57G8.5-cgr-1
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061902:CAMT-1_interacting
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064762:freezing-thaw_regulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00064952:Day10_vs_L4_downregulated_25C
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065841:13_1
WBPaper00065841:57_1
WBPaper00065841:98_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_5
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036286:Pattern_C
WBPaper00036383:ash-2_Day8_regulated
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038304:octr-1_regulated
WBPaper00039866:ClassComp_daf-19_downregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040963:Q50_up
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00044091:Bpseudomallei_repressed_8h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00048637:lin-35(n745)_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
WBPaper00053827:pyoverdine_upregulated
InteractionWBInteraction000005491
WBInteraction000005492
WBInteraction000005493
WBInteraction000005494
WBInteraction000558383
WBInteraction000566086
WBInteraction000576745
WBInteraction000581185
WBInteraction000583611
WBInteraction000586643
Map_infoMapXPosition-9.99748Error0.017886
PositivePositive_cloneT27A10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5042
Pseudo_map_position
ReferenceWBPaper00026855
WBPaper00033118
WBPaper00036028
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene