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WormBase Tree Display for Gene: WBGene00019998

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Name Class

WBGene00019998SMapS_parentSequenceR10H1
IdentityVersion1
NameSequence_nameR10H1.1
Molecular_nameR10H1.1
R10H1.1.1
CE31820
Other_nameCELE_R10H1.1Accession_evidenceNDBBX284602
Public_nameR10H1.1
DB_infoDatabaseAceViewgene2H785
WormQTLgeneWBGene00019998
WormFluxgeneWBGene00019998
NDBlocus_tagCELE_R10H1.1
PanthergeneCAEEL|WormBase=WBGene00019998|UniProtKB=Q10043
familyPTHR22115
NCBIgene259445
RefSeqproteinNM_063167.13
SwissProtUniProtAccQ10043
TREEFAMTREEFAM_IDTF320071
UniProt_GCRPUniProtAccQ10043
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (29)
RNASeq_FPKM (74)
Ortholog (18)
Structured_descriptionAutomated_descriptionEnriched in several structures, including anterior hypodermis; body wall musculature; interfacial epithelial cell; intestine; and rectal gland cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; skn-1; and dpy-10 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by nine chemicals including Rifampin; Psoralens; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Coiled-coil domain-containing protein 50; Coiled-coil domain-containing protein 50, N-terminal; and Coiled-coil domain-containing protein 50 N-terminus.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR10H1.1
Corresponding_CDS_historyR10H1.1:wp85
Corresponding_transcriptR10H1.1.1
Other_sequenceCSC02172_1
FD517248.1
Associated_featureWBsf657170
WBsf657826
WBsf988462
WBsf221599
Experimental_infoRNAi_resultWBRNAi00051734Inferred_automaticallyRNAi_primary
WBRNAi00017725Inferred_automaticallyRNAi_primary
Expr_patternExpr1025223
Expr1038684
Expr1155399
Expr2005565
Expr2023783
Drives_constructWBCnstr00025441
Construct_productWBCnstr00025441
Microarray_results (18)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:bodywall-muscle_CoreEnriched
WBPaper00037950:bodywall-muscle_embryo_enriched
WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00040990:PA14_upregulated
WBPaper00044037:eat-2_regulated_nhr-62_dependent
WBPaper00044037:eat-2_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00049334:CE_intestine_enriched
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049498:npr-1(ur89)_regulated_1
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:intestine_enriched
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057143:ztf-11(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061106:endu-2(tm4977)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AMsh
WBPaper00061340:Excretory_duct_and_pore
WBPaper00061340:hyp1V_and_ant_arc_V
WBPaper00061340:hyp1_hyp2
WBPaper00061340:Rectal_gland
WBPaper00061341:28C_24h_upregulated
WBPaper00061651:Rectal_gland_enriched
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00063930:BRD-1_interacting
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065258:anchor-cell_enriched
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065841:1_1
WBPaper00065841:4_1
WBPaper00065841:30_4
WBPaper00065841:100_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4386_cluster_1_3
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00031832:slr-2_regulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00034739:N2lessDR1350
WBPaper00034739:RIL17lessRIL14
WBPaper00034757:up_by_oxidative_stress
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_I
WBPaper00038060:SUMO-1_downregulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038304:octr-1_regulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041207:CE_dauer_up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00050538:Fasting_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc6390]:Cluster_A
Interaction (76)
Map_infoPositivePositive_cloneR10H1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.5034
MethodGene