WormBase Tree Display for Gene: WBGene00019546

WBGene00019546 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: glct-6 Person_evidence: WBPerson1983
      Sequence_name: W07G9.2
      Molecular_name: W07G9.2a
        W07G9.2a.1
        CE39798
        W07G9.2b
        CE50307
        W07G9.2c
        CE50304
        W07G9.2b.1
        W07G9.2c.1
      Other_name: K09B3.2
        W07G9.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_W07G9.2 Accession_evidence: NDB BX284604
      Public_name: glct-6
    DB_info: Database: AceView gene 4E555
        WormFlux gene WBGene00019546
        NDB locus_tag CELE_W07G9.2
        Panther gene CAEEL|WormBase=W07G9.2b|UniProtKB=A0A0K3AUF6
          family PTHR10896
        NCBI gene 4363062
        RefSeq protein NM_001380161.2
            NM_001313036.3
            NM_001313035.3
        KEGG KEGG_id 2.4.1.135
        NemaPath KEGG_id 2.4.1.135
        TrEMBL UniProtAcc A0A0K3ARJ9
            A0A0K3AUF6
            G4SN66
        UniProt_GCRP UniProtAcc A0A0K3AUF6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Sep 2008 13:35:32 WBPerson2970 Name_change: CGC_name: glct-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: glct
    Allele (147)
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog (49)
    Paralog: WBGene00008160 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00008293 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00008479 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00011650 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00011781 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00005026 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be involved in carbohydrate metabolic process and chondroitin sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in Barrett's esophagus and schizophrenia. Is an ortholog of human B3GAT1 (beta-1,3-glucuronyltransferase 1) and B3GAT2 (beta-1,3-glucuronyltransferase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (2)
  Molecular_info: Corresponding_CDS: W07G9.2a
      W07G9.2b
      W07G9.2c
    Corresponding_CDS_history: K09B3.2:wp154
    Corresponding_transcript: W07G9.2a.1
      W07G9.2b.1
      W07G9.2c.1
    Other_sequence: Acan_isotig04721
      ACC38686_1
      EY460287.1
      BU665944.1
      AS13682
      CJC00145_1
      ACC32967_1
      Acan_isotig04720
      NAC00723_1
      EY461809.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00103571 Inferred_automatically: RNAi_primary
      WBRNAi00078601 Inferred_automatically: RNAi_primary
      WBRNAi00034186 Inferred_automatically: RNAi_primary
      WBRNAi00019710 Inferred_automatically: RNAi_primary
      WBRNAi00016876 Inferred_automatically: RNAi_primary
      WBRNAi00050378 Inferred_automatically: RNAi_primary
      WBRNAi00115913 Inferred_automatically: RNAi_primary
      WBRNAi00078668 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016151
      Expr1038448
      Expr1158502
      Expr2012085
      Expr2030321
    Drives_construct: WBCnstr00025774
    Construct_product: WBCnstr00025774
    Microarray_results (20)
    Expression_cluster: WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Spermatogenic
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050094:glp-1(gf)_upregulated
      WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
      WBPaper00050231:male_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056218:daf-16(mu86)_downregulated_Day7
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056586:kri-1(ok1251)_upregulated
      WBPaper00056619:CEPsh_enriched
      WBPaper00056826:hmc_biased
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:AMsh
      WBPaper00061340:Excretory_cell
      WBPaper00061340:Excretory_duct_and_pore
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061405:S.aureus_upregulated_starvation
      WBPaper00061527:nhr-107_19485-nhr-109_3743
      WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:hsf-1(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
      WBPaper00065841:21_1
      WBPaper00065841:37_0
      WBPaper00065841:58_0
      WBPaper00065841:58_1
      WBPaper00065841:59_0
      WBPaper00065841:79_1
      WBPaper00065841:122_0
      WBPaper00065841:135_0
      WBPaper00065841:141_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_16
      cgc4489_group_23
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00037695:WC_5-day
      WBPaper00039851:HK_C_albicans_vs_HK_OP50
      WBPaper00040184:hcf-1down_sir-2.1up_daf-2nc
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotype_environment_interaction
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00050767:Octopamine_induced
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:mixed_spermatogenesis-somatic
    Interaction: WBInteraction000274526
      WBInteraction000379723
      WBInteraction000389797
  Map_info: Map: IV Position: -2.25846 Error: 0.014484
    Positive: Positive_clone: W07G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065080
    WBPaper00065331
  Remark: K09B3.2 renamed W07G9.2 Curator_confirmed: WBPerson1867
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene