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WormBase Tree Display for Gene: WBGene00019163

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Name Class

WBGene00019163SMapS_parentSequenceH06H21
IdentityVersion3
NameCGC_nameubxn-6Person_evidence (2)
Sequence_nameH06H21.6
Molecular_nameH06H21.6
H06H21.6.1
CE33662
Other_nameCELE_H06H21.6Accession_evidenceNDBBX284604
Public_nameubxn-6
DB_infoDatabaseAceViewgene4F572
WormQTLgeneWBGene00019163
WormFluxgeneWBGene00019163
NDBlocus_tagCELE_H06H21.6
PanthergeneCAEEL|WormBase=WBGene00019163|UniProtKB=Q8WTJ4
familyPTHR23153
NCBIgene177253
RefSeqproteinNM_068247.8
SwissProtUniProtAccQ8WTJ4
TREEFAMTREEFAM_IDTF314617
UniProt_GCRPUniProtAccQ8WTJ4
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
205 Jan 2006 11:22:20WBPerson2970Name_changeCGC_nameubxn-6
306 Mar 2018 14:47:25WBPerson4025EventSplit_intoWBGene00302995
Split_intoWBGene00302995
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classubxn
Allele (36)
StrainWBStrain00003521
RNASeq_FPKM (74)
GO_annotation00085376
00085377
00085378
Contained_in_operonCEOP4152
CEOP5608
Ortholog (36)
ParalogWBGene00007100Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionubxn-6 encodes one of six C. elegans UBX (ubiquitin regulatory X) domain-containing proteins.Paper_evidenceWBPaper00029386
WBPaper00037734
Curator_confirmedWBPerson1843
Date_last_updated05 Apr 2011 00:00:00
Automated_descriptionPredicted to be located in cytoplasm. Expressed in pharynx. Is an ortholog of human UBXN6 (UBX domain protein 6).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSH06H21.6
Corresponding_CDS_historyH06H21.6:wp97
H06H21.6a:wp264
H06H21.6b:wp264
Corresponding_transcriptH06H21.6.1
Associated_featureWBsf230024
Experimental_infoRNAi_resultWBRNAi00049314Inferred_automaticallyRNAi_primary
WBRNAi00062292Inferred_automaticallyRNAi_primary
WBRNAi00016208Inferred_automaticallyRNAi_primary
WBRNAi00049313Inferred_automaticallyRNAi_primary
WBRNAi00033670Inferred_automaticallyRNAi_primary
WBRNAi00078147Inferred_automaticallyRNAi_primary
Expr_patternExpr4671
Expr4677
Expr6273
Expr1025316
Expr1038275
Expr1153059
Expr2017734
Expr2035873
Drives_constructWBCnstr00003979
WBCnstr00012165
WBCnstr00026018
Construct_productWBCnstr00012165
WBCnstr00026018
AntibodyWBAntibody00002858
Microarray_results (31)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00055354:Rapamycin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00059174:MEG-3_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061527:F31C3.4_6048-cutc-1_15804
WBPaper00061527:lst-4_22151-F46F11.6_12556
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062123:GLH-1_interacting
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064201:SNA-3_interacting
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00025032:cluster_1
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00034739:N2lessDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_G
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:TA300_down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
[cgc5767]:cluster_1
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(23_min)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:Cluster_F
[cgc6390]:intrinsic
Interaction (76)
Map_infoMapIVPosition1.28692Error0.004576
PositivePositive_cloneH06H21Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029386
WBPaper00037734
WBPaper00038491
WBPaper00055090
WBPaper00055951
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene