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WormBase Tree Display for Gene: WBGene00016763

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Name Class

WBGene00016763SMapS_parentSequenceC49A9
IdentityVersion1
NameSequence_nameC49A9.9
Molecular_nameC49A9.9a
C49A9.9a.1
CE27112
C49A9.9b
Other_nameCELE_C49A9.9Accession_evidenceNDBBX284604
Public_nameC49A9.9
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (76)
RNASeq_FPKM (74)
Ortholog (15)
Paralog (30)
Structured_descriptionAutomated_descriptionEnriched in head mesodermal cell; intestine; and rectal gland cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and let-60 based on microarray; RNA-seq; and proteomic studies. Is affected by twelve chemicals including Tunicamycin; stavudine; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF272); Phosphorylation site; and Protein of unknown function DUF272.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC49A9.9a
Corresponding_CDS_historyC49A9.9b:wp240
Corresponding_transcript (2)
Associated_featureWBsf646008
WBsf228377
WBsf228378
WBsf228379
Experimental_infoRNAi_resultWBRNAi00043613Inferred_automaticallyRNAi_primary
WBRNAi00006511Inferred_automaticallyRNAi_primary
WBRNAi00012654Inferred_automaticallyRNAi_primary
WBRNAi00085824Inferred_automaticallyRNAi_primary
WBRNAi00042771Inferred_automaticallyRNAi_primary
WBRNAi00012111Inferred_automaticallyRNAi_primary
Expr_patternExpr1146757
Expr2001760
Expr2019988
Drives_constructWBCnstr00027821
Construct_productWBCnstr00027821
Microarray_results (20)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_CoreEnriched
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045390:tunicamycin_downregulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045486:starvation_downregulated
WBPaper00045571:germline-ablation_upregulated
WBPaper00045861:wdr-5(ok1417)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00046795:starvation_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049018:ham-3(RNAi)_downregulated
WBPaper00049290:rsks-1(sv31)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050121:mir-60(n4947)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219)
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:female_vs_male_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00055049:S.gordonii_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056039:ptl-1(ok621)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061340:Rectal_gland
WBPaper00061527:nhr-107_19485-nhr-109_3743
WBPaper00061651:Rectal_gland_enriched
WBPaper00061823:mex-3(spr9)_downregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_upregulated_protein
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064532:pals-25(jy111)_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:AFD_depleted
WBPaper00065258:anchor-cell_depleted
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065841:3_4
WBPaper00065841:11_3
WBPaper00065841:13_1
WBPaper00065841:30_0
WBPaper00065841:30_3
WBPaper00065841:45_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_7
WBPaper00026980:intestine_enriched
WBPaper00036286:Pattern_G
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045673:colistin_upregulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc6390]:Cluster_B
[cgc6390]:herm_soma-enriched
InteractionWBInteraction000578336
Map_infoPositivePositive_cloneC49A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV3.10548
ReferenceWBPaper00061818
WBPaper00065331
MethodGene