WormBase Tree Display for Gene: WBGene00012505

WBGene00012505 SMap: S_parent: Sequence: Y26D4A
  Identity: Version: 2
    Name: CGC_name: pals-13 Person_evidence: WBPerson260
      Sequence_name: Y26D4A.8
      Molecular_name (4)
      Other_name: CELE_Y26D4A.8 Accession_evidence: NDB BX284601
      Public_name: pals-13
    DB_info: Database: AceView gene 1N672
        WormQTL gene WBGene00012505
        WormFlux gene WBGene00012505
        NDB locus_tag CELE_Y26D4A.8
        NCBI gene 189548
        RefSeq mRNA NM_060889.1
          protein NP_493290.1
            NM_060889.2
        TREEFAM TREEFAM_ID TF322118
        UniProt UniProtAcc Q9U2P6
        TrEMBL UniProtAcc Q9U2P6
        UniProt_GCRP UniProtAcc Q9U2P6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-13
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (98)
    RNASeq_FPKM (74)
    Ortholog: WBGene00271585 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CSP26.g4056 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g862 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_V.g18706 Caenorhabditis nigoni From_analysis: WormBase-Compara
      GCK72_018441 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g2647 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00007657 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007659 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007660 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007131 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007132 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007134 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine based on RNA-seq studies. Is affected by several genes including sir-2.1; clk-1; and csr-1 based on microarray and RNA-seq studies. Is affected by six chemicals including allantoin; metformin; and Psoralens based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y26D4A.8
    Corresponding_transcript: Y26D4A.8.1
    Associated_feature: WBsf985773
  Experimental_info: RNAi_result: WBRNAi00002980 Inferred_automatically: RNAi_primary
      WBRNAi00055750 Inferred_automatically: RNAi_primary
      WBRNAi00004571 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025809
      Expr1159273
      Expr2032922
    Drives_construct: WBCnstr00029937
    Construct_product: WBCnstr00029937
    Microarray_results (14)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00045774:clk-1_upregulated
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00055354:Allantoin_upregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059605:mut-16(pk710)_downregulated
      WBPaper00061479:hrde-1(tm1200)_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      cgc4489_group_3
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00045015:acs-3(ft5)_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
  Map_info: Map: I Position: 17.2163
    Positive: Positive_clone: Y26D4A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene