WormBase Tree Display for Gene: WBGene00012017

WBGene00012017 SMap: S_parent: Sequence: T25C8
  Identity: Version: 2
    Name: CGC_name: shpk-1 Person_evidence: WBPerson81
      Sequence_name: T25C8.1
      Molecular_name: T25C8.1
        T25C8.1.1
        CE54129
      Other_name: exc-10
        CELE_T25C8.1 Accession_evidence: NDB BX284603
      Public_name: shpk-1
    DB_info: Database: AceView gene 3O699
        WormQTL gene WBGene00012017
        WormFlux gene WBGene00012017
        NDB locus_tag CELE_T25C8.1
        Panther gene CAEEL|WormBase=WBGene00012017|UniProtKB=O45814
          family PTHR10196
        NCBI gene 188886
        RefSeq protein NM_001379986.2
        TREEFAM TREEFAM_ID TF315140
        TrEMBL UniProtAcc O45814
        UniProt_GCRP UniProtAcc O45814
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: shpk
    Allele (65)
    RNASeq_FPKM (74)
    GO_annotation: 00035306
      00035307
      00035308
      00035309
      00035310
      00035311
      00035312
      00119213
      00119214
    Ortholog (20)
    Paralog: WBGene00011147 Caenorhabditis elegans From_analysis: Panther
      WBGene00020007 Caenorhabditis elegans From_analysis: Panther
      WBGene00016939 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable sedoheptulokinase activity. Predicted to be involved in glycerol metabolic process and phosphorylation. Predicted to be located in cytosol. Is an ortholog of human SHPK (sedoheptulokinase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T25C8.1
    Corresponding_CDS_history: T25C8.1:wp141
      T25C8.1:wp275
    Corresponding_transcript: T25C8.1.1
    Associated_feature: WBsf645721
      WBsf659746
      WBsf994946
      WBsf994947
      WBsf1016420
      WBsf226036
  Experimental_info: RNAi_result: WBRNAi00019202 Inferred_automatically: RNAi_primary
      WBRNAi00006457 Inferred_automatically: RNAi_primary
      WBRNAi00054118 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022106
      Expr1157663
      Expr2006494
      Expr2024713
    Microarray_results (19)
    Expression_cluster: WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_2
      WBPaper00026980:intestine_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00036286:Pattern_H
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
    Interaction (26)
  Map_info: Map: III Position: 21.2932
    Positive: Positive_clone: T25C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene