WormBase Tree Display for Gene: WBGene00011975

WBGene00011975 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 2
    Name: CGC_name: golg-5 Person_evidence: WBPerson260
      Sequence_name: T24B1.1
      Molecular_name: T24B1.1
        T24B1.1.1
        CE27210
      Other_name: CELE_T24B1.1 Accession_evidence: NDB BX284601
      Public_name: golg-5
    DB_info: Database: AceView gene 1I253
        WormQTL gene WBGene00011975
        WormFlux gene WBGene00011975
        NDB locus_tag CELE_T24B1.1
        Panther gene CAEEL|WormBase=WBGene00011975|UniProtKB=P90970
          family PTHR13815
        NCBI gene 172527
        RefSeq protein NM_059736.6
        SwissProt UniProtAcc P90970
        TREEFAM TREEFAM_ID TF319468
        UniProt_GCRP UniProtAcc P90970
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jan 2022 00:59:31 WBPerson1983 Name_change: CGC_name: golg-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: golg
    Allele (36)
    Strain: WBStrain00037006
      WBStrain00055154
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1416
    Ortholog (33)
    Structured_description: Concise_description: T24B1.1 is orthologous to the human gene GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 5 (GOLGA5; OMIM:606918), which when mutated leads to disease. Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 06 Aug 2004 00:00:00
      Automated_description: Predicted to enable protein homodimerization activity. Predicted to be involved in Golgi organization and retrograde transport, vesicle recycling within Golgi. Predicted to be located in Golgi cisterna and Golgi membrane. Is an ortholog of human GOLGA5 (golgin A5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T24B1.1
    Corresponding_transcript: T24B1.1.1
    Other_sequence (25)
    Associated_feature: WBsf643476
      WBsf984247
      WBsf1010124
      WBsf218056
      WBsf218057
      WBsf218058
  Experimental_info: RNAi_result: WBRNAi00116984 Inferred_automatically: RNAi_primary
      WBRNAi00019098 Inferred_automatically: RNAi_primary
      WBRNAi00054016 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023695
      Expr1035291
      Expr1157560
      Expr2006434
      Expr2024654
    Drives_construct: WBCnstr00030234
    Construct_product: WBCnstr00030234
    Microarray_results (19)
    Expression_cluster: WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045521:Spermatogenic
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00049942:HeatShock_downregulated_hsf-1(+)
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051311:VGLN-1-interacting
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055897:heat-shock_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:T20D3.3-R08D7.4
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_upregulated_CB4856_protein
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_4_4
      cgc4489_group_14
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036286:Pattern_H
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00053688:E.faecium_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:herm_sex-enriched
    Interaction: WBInteraction000115584
      WBInteraction000161060
      WBInteraction000283445
  Map_info: Map: I Position: 2.23174
    Positive: Positive_clone: T24B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (4)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene