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WormBase Tree Display for Gene: WBGene00011103

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Name Class

WBGene00011103SMapS_parentSequenceR07E3
IdentityVersion2
Name (5)
DB_infoDatabase (8)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
204 Jan 2022 10:41:14WBPerson1983Name_changeCGC_nameidpa-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classidpa
Allele (16)
RNASeq_FPKM (74)
OrthologWBGene00036919Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00122119Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00058482Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
CSP26.g9708Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP40.g3514Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-R07E3.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13719Caenorhabditis tropicalisFrom_analysisWormBase-Compara
FL83_01343Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023562Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g19888Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionExpressed in basal lamina; cuticle; grinder; and terminal bulb.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR07E3.2
Corresponding_CDS_historyR07E3.2:wp223
Corresponding_transcriptR07E3.2.1
Other_sequence (11)
Associated_featureWBsf663230
WBsf236272
Experimental_infoRNAi_resultWBRNAi00051465Inferred_automaticallyRNAi_primary
WBRNAi00017546Inferred_automaticallyRNAi_primary
Expr_patternExpr16366
Expr1013567
Expr1034877
Expr1155152
Expr2005457
Expr2023678
Drives_constructWBCnstr00042976
Construct_productWBCnstr00042976
Microarray_results (12)
Expression_clusterWBPaper00024505:pharyngeal_enriched
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040209:B.thuringiensis_downregulated_MY15
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045774:clk-1_upregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046024:sleep_upregulated_oscillating
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049334:CE_intestine_enriched
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00054191:H3.3(null)_L1_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Psora_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056169:rrf-3(pk1426)_downregulated_adult
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056617:adr-1_downregulated_L4_transcript
WBPaper00057143:ztf-11(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:tub-2_4713-daf-2_5288
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061651:MI_enriched
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065074:glna(-)_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:AFD_enriched
WBPaper00065392:Lb.delbrueckii_upregulated
WBPaper00065392:Lb.rhamnosus_upregulated
WBPaper00065623:139
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065841:59_0
WBPaper00065841:139_0
WBPaper00066093:E.coli-purE_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
cgc4489_group_23
WBPaper00005475:Aging-regulated
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026980:intestine_enriched
WBPaper00027111:rrf-2(ok210)_upregulated
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00033101:spr-5_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00037113:CPF_16C_down-regulated
WBPaper00037147:heatshock_downregulated
WBPaper00037147:heatshock_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045673:colistin_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
Interaction (14)
Map_infoMapXPosition1.97192
PositivePositive_cloneR07E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00064648
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene