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WormBase Tree Display for Gene: WBGene00010334

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Name Class

WBGene00010334SMapS_parentSequenceCHROMOSOME_X
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classdel
Allele (42)
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (24)
Paralog (30)
Structured_descriptionAutomated_descriptionPredicted to enable ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Expressed in intestinal cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF59F3.4
Corresponding_CDS_historyF59F3.4:wp83
Corresponding_transcriptF59F3.4.1
Associated_featureWBsf654381
WBsf671010
WBsf237928
WBsf237929
Experimental_infoRNAi_resultWBRNAi00016131Inferred_automaticallyRNAi_primary
WBRNAi00033219Inferred_automaticallyRNAi_primary
WBRNAi00049215Inferred_automaticallyRNAi_primary
WBRNAi00015929Inferred_automaticallyRNAi_primary
WBRNAi00048923Inferred_automaticallyRNAi_primary
WBRNAi00091095Inferred_automaticallyRNAi_primary
Expr_patternExpr16223
Expr16225
Expr1016641
Expr1152959
Expr2010851
Expr2029089
Drives_constructWBCnstr00031494
WBCnstr00042833
WBCnstr00042835
Construct_productWBCnstr00031494
WBCnstr00042835
Microarray_results (21)
Expression_clusterWBPaper00032425:down_in_alg-1
WBPaper00032425:down_in_rde-4
WBPaper00032425:down_in_zfp-1
WBPaper00032976:dosage_compensated_genes
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041071:spe-44_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045390:tunicamycin_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(+)
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050344:AFD-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051257:Levamisole_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056290:mdt-15(mg584)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:hmc_biased
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057347:nhr-14(tm1473)_upreglated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:nhr-18-C34D1.4_6256
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065841:21_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_8
cgc4489_group_12
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00027111:rrf-1(pk1417)_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032948:StarveUp2
WBPaper00036123:Fluoranthene_regulated
WBPaper00036286:Pattern_I
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053688:E.faecalis_upregulated
WBPaper00055899:nitroguanidine_regulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc6390]:male_sex-enriched
InteractionWBInteraction000450700
WBInteraction000579065
Map_infoMapXPosition2.8439
PositivePositive_cloneF59F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00064140
WBPaper00064563
WBPaper00065080
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene