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WormBase Tree Display for Gene: WBGene00009451

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Name Class

WBGene00009451SMapS_parentSequenceF36A2
IdentityVersion2
NameCGC_namecids-2Person_evidenceWBPerson71
Sequence_nameF36A2.1
Molecular_name (13)
Other_nameCELE_F36A2.1Accession_evidenceNDBBX284601
Public_namecids-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
207 Jan 2008 15:11:50WBPerson2970Name_changeCGC_namecids-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcids
Allele (44)
RNASeq_FPKM (74)
GO_annotation00004984
00004985
00004986
Ortholog (34)
ParalogWBGene00017004Caenorhabditis elegansFrom_analysisPanther
WBGene00015347Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptioncids-2 encodes a protein that contains a CTD (C-terminal domain of RNA Pol II)-interacting domain and that is paralogous to CIDS-1; cids-2 was identified genetically as a suppressor of the SynMuv phenotype produced by lin-15AB(n765), a mutation that results in transposition of the 3'-end cleavage and polyadenylation signal of another gene into the third exon of lin-15B; qRT-PCR assays suggest that CIDS-2 plays a role in 3'-end cleavage.Paper_evidenceWBPaper00032289
Curator_confirmedWBPerson1843
Date_last_updated30 Sep 2009 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II complex binding activity. Involved in mRNA 3'-end processing. Is an ortholog of human RPRD2 (regulation of nuclear pre-mRNA domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF36A2.1a
F36A2.1b
F36A2.1c
F36A2.1d
Corresponding_CDS_historyF36A2.1:wp90
F36A2.1a:wp151
F36A2.1b:wp151
Corresponding_transcriptF36A2.1e
F36A2.1a.1
F36A2.1b.1
F36A2.1c.1
F36A2.1d.1
Other_sequence (14)
Associated_featureWBsf649420
WBsf981065
WBsf984512
WBsf984513
WBsf1010278
WBsf219985
Experimental_infoRNAi_result (12)
Expr_patternExpr1018602
Expr1034136
Expr1150306
Expr2010012
Expr2028253
Microarray_results (29)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048762:FOG-3_associated
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056619:CEPsh_enriched
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:RIA_parent
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:cids-2_2203-attf-2_2451
WBPaper00061527:trcs-2_5724-R11A8.7_17645
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00062498:PPM-1.D_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065005:sams-4(RNAi)_downregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_5_1
WBPaper00025032:cluster_13
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00031060:2-deoxy-D-glucose_downregulated
WBPaper00034739:N2moreDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00037695:DD_3-day
WBPaper00037695:LD_3-day
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00055435:AuNPs_downregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(143_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:Cluster_F
[cgc6390]:oogenesis-enriched
Interaction (16)
Map_infoMapIPosition3.14648Error0.006318
PositivePositive_cloneF36A2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00032289
WBPaper00036363
WBPaper00041428
WBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene