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WormBase Tree Display for Gene: WBGene00007687

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Name Class

WBGene00007687SMapS_parentSequenceC18E9
IdentityVersion1
NameSequence_nameC18E9.7
Molecular_nameC18E9.7
C18E9.7.1
CE52583
Other_nameCELE_C18E9.7Accession_evidenceNDBBX284602
Public_nameC18E9.7
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (46)
RNASeq_FPKM (74)
Ortholog (30)
ParalogWBGene00002915Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011326Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017013Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020516Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in arcade cell; excretory gland cell; pharyngeal muscle cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; D-glucose; and stavudine based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Human TNXB enables collagen fibril binding activity. Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; TM proximal of protein tyrosine phosphatase, receptor type J; PTPRJ, transmembrane domain; Fibronectin type III; Immunoglobulin-like fold; and Fibronectin type III domain. Is an ortholog of human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9620Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11976)
DOID:13359Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11976)
Molecular_infoCorresponding_CDSC18E9.7
Corresponding_CDS_historyC18E9.7:wp263
Corresponding_transcriptC18E9.7.1
Other_sequenceAS08763
ACC05160_1
MHC09111_1
ACC34413_1
MH10960
ASC04679_1
FC551183.1
FC551769.1
JI212309.1
Acan_isotig14345
Associated_featureWBsf665870
WBsf665871
WBsf717750
WBsf988890
WBsf988891
WBsf1012779
WBsf1012780
WBsf223579
Experimental_infoRNAi_resultWBRNAi00011009Inferred_automaticallyRNAi_primary
WBRNAi00081689Inferred_automaticallyRNAi_primary
WBRNAi00040956Inferred_automaticallyRNAi_primary
Expr_patternExpr1016580
Expr1033322
Expr1144999
Expr2000984
Expr2019203
Drives_constructWBCnstr00033554
Construct_productWBCnstr00033554
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00044260:1-methylnicotinamide_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045316:prg-1_downregulated_L1
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00046024:sleep_upregulated_oscillating
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00047132:skn-1(RNAi)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056169:rrf-3(pk1426)_downregulated_adult
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056284:ints-1(RNAi)_downregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060871:M.humicola-extract_1h_regulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00060921:tph-1(mg280)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Anterior_arcade_cell
WBPaper00061340:Arcade_cell_anterior_and_posterior
WBPaper00061340:Excretory_gland
WBPaper00061340:pm6
WBPaper00061340:pm7
WBPaper00061340:Posterior_arcade_cell
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:bus-8_3160-K04H4.2_2324
WBPaper00061527:R12A1.3-M195.2
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00061952:daf-18(nr2037)_upregulated
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065734:unc-25(e156)_downregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:50_0
WBPaper00065841:51_0
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031832:slr-2_regulated
WBPaper00034739:N2lessDR1350
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00038172:crh-1null_down_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045673:colistin_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc6390]:Cluster_C
Interaction (56)
Map_infoPositivePositive_cloneC18E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.946824
ReferenceWBPaper00053423
MethodGene