WormBase Tree Display for Gene: WBGene00002915
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| WBGene00002915 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H19M22 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | let-805 | Person_evidence | WBPerson533 | |||||
| Sequence_name | H19M22.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | H19M22.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| H19M22.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| H19M22.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y71H2AL.d | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y71H2AL.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y71H2AL.f | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_H19M22.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | let-805 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:29 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | let | ||||||||
| Allele (416) | |||||||||
| Possibly_affected_by | WBVar02152894 | ||||||||
| WBVar02152895 | |||||||||
| WBVar02152896 | |||||||||
| WBVar02152897 | |||||||||
| WBVar02152898 | |||||||||
| WBVar02152899 | |||||||||
| WBVar02152900 | |||||||||
| Strain | WBStrain00033530 | ||||||||
| WBStrain00026589 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022979 | ||||||||
| 00022980 | |||||||||
| 00022981 | |||||||||
| 00022982 | |||||||||
| 00022983 | |||||||||
| 00022984 | |||||||||
| 00091539 | |||||||||
| 00100800 | |||||||||
| 00100801 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00007687 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | let-805 encodes myotactin, a novel single-transmembrane protein containing extracellular fibronectin repeats; genetic analyses indicate that LET-805 is essential for proper association between hypodermal fibrous organelles and the contractile apparatus of muscle cells; LET-805 is expressed in hypodermal cells and in the pharynx and localizes to basolateral membranes. | Paper_evidence | WBPaper00003643 | |||||
| WBPaper00025137 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jan 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable cytokine binding activity and cytokine receptor activity. Involved in hemidesmosome assembly. Located in hemidesmosome. Expressed in hypodermal cell; hypodermis; pharynx; touch receptor neurons; and uterine seam cell. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Is an ortholog of human TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||
| DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||||
| Molecular_info | Corresponding_CDS | H19M22.2a | |||||||
| H19M22.2b | |||||||||
| H19M22.2c | |||||||||
| H19M22.2d | |||||||||
| Corresponding_transcript | H19M22.2a.1 | ||||||||
| H19M22.2b.1 | |||||||||
| H19M22.2c.1 | |||||||||
| H19M22.2d.1 | |||||||||
| Other_sequence (67) | |||||||||
| Associated_feature (34) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1192 | ||||||||
| Expr1193 | |||||||||
| Expr13531 | |||||||||
| Expr1028294 | |||||||||
| Expr1031372 | |||||||||
| Expr1153159 | |||||||||
| Expr2013078 | |||||||||
| Expr2031310 | |||||||||
| Antibody | WBAntibody00000057 | ||||||||
| Microarray_results (50) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | III | Position | -10.8567 | Error | 0.072737 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | H19M22 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3945 | |||||||
| 4853 | |||||||||
| 4820 | |||||||||
| 5577 | |||||||||
| Landmark_gene | |||||||||
| Reference (27) | |||||||||
| Remark | H19M22.2e was disconnected from let-805 [Blasiar D][030411 ck1] | ||||||||
| Method | Gene |
