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WormBase Tree Display for Gene: WBGene00006585

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Name Class

WBGene00006585SMapS_parentSequenceT20B3
IdentityVersion1
NameCGC_nametni-3Person_evidenceWBPerson300
Sequence_nameT20B3.2
Molecular_nameT20B3.2
T20B3.2.1
CE20087
Other_nameCELE_T20B3.2Accession_evidenceNDBBX284605
Public_nametni-3
DB_infoDatabaseAceViewgene5R314
WormQTLgeneWBGene00006585
WormFluxgeneWBGene00006585
NDBlocus_tagCELE_T20B3.2
PanthergeneCAEEL|WormBase=WBGene00006585|UniProtKB=Q9XUN9
familyPTHR13738
NCBIgene180127
RefSeqproteinNM_074849.9
SwissProtUniProtAccQ9XUN9
TREEFAMTREEFAM_IDTF313374
UniProt_GCRPUniProtAccQ9XUN9
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtni
Allele (63)
StrainWBStrain00049392
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (47)
ParalogWBGene00006584Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006764Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006586Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptiontni-3 encodes one of the four elegans troponin I genes; tni-3 is required for coordinated movement, normal body and muscle morphology and for the proper contractions of the vulva and anus; CeTNI-3 interacts with both the body wall and pharynx troponin C; tni-3 is strongly expressed in body wall, head and vulval muscles.Paper_evidenceWBPaper00025009
Curator_confirmedWBPerson324
Date_last_updated29 Jan 2007 00:00:00
Automated_descriptionEnables troponin C binding activity. Involved in egg-laying behavior; muscle contraction; and post-embryonic body morphogenesis. Located in sarcomere. Expressed in body wall musculature; non-striated muscle; rectal muscle; and in male. Is an ortholog of human TNNI1 (troponin I1, slow skeletal type).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST20B3.2
Corresponding_transcriptT20B3.2.1
Other_sequence (66)
Associated_feature (3)
Experimental_infoRNAi_resultWBRNAi00033405Inferred_automaticallyRNAi_primary
WBRNAi00061229Inferred_automaticallyRNAi_primary
WBRNAi00077598Inferred_automaticallyRNAi_primary
WBRNAi00053595Inferred_automaticallyRNAi_primary
WBRNAi00066673Inferred_automaticallyRNAi_primary
WBRNAi00078124Inferred_automaticallyRNAi_primary
WBRNAi00078123Inferred_automaticallyRNAi_primary
WBRNAi00018885Inferred_automaticallyRNAi_primary
WBRNAi00066586Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00012212
WBCnstr00012216
WBCnstr00034288
Construct_productWBCnstr00013929
WBCnstr00034288
Microarray_results (20)
Expression_clusterWBPaper00024505:pharyngeal_enriched
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_downregulated_cDNA_24h
WBPaper00032425:down_in_lin-35
WBPaper00032425:down_in_zfp-1
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037682:sma-2_downregulated
WBPaper00040420:ALM_PLM_enriched
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044128:daf-2(e1370)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:daf-16(mu86)_upregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049217:TCER-1_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049626:UNC-75_target
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049954:BPA_downregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050053:muscle_enriched_Day12
WBPaper00050231:male_enriched
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_specific
WBPaper00051245:cytoplasm_specific
WBPaper00051265:F4_morc-1(tm6048)_downregulated
WBPaper00051352:Long-Term-Association-Memory_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:female_vs_male_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053814:25C_downregulated_OP50
WBPaper00054191:H3.3(null)_L1_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055897:heat-shock_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056039:efa-6(tm3124)_upregulated
WBPaper00056039:hda-6(ok3203)_upregulated
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:hmc_biased
WBPaper00056900:TOFU-6_interacting
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_upregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061040:FW1256_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:mu_int_mu_anal
WBPaper00061340:mu_sph
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061527:mup-2-unc-87_284
WBPaper00061527:myo-3-Y71G12B.11_22540
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064502:spe-44(fx110)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065623:143
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:4_1
WBPaper00065841:4_2
WBPaper00065841:7_0
WBPaper00065841:7_3
WBPaper00065841:38_0
WBPaper00065841:38_1
WBPaper00065841:38_2
WBPaper00065841:38_3
WBPaper00065841:143_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4386_cluster_3_1
cgc4489_group_16
WBPaper00025141:N2_Expressed_Genes
WBPaper00026629:L4_male_enriched
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_6
WBPaper00034739:RIL17moreRIL14
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-7_regulated
WBPaper00035873:osm-11_regulated
WBPaper00036286:Pattern_C
WBPaper00036383:ash-2_Day8_regulated
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00047070:N2_starvation_upregulated
WBPaper00055899:nitroguanidine_regulated
[cgc6390]:Cluster_C
[cgc6390]:male_soma-enriched
Interaction (31)
Map_infoMapVPosition11.2175Error0.002532
PositivePositive_cloneT20B3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (11)
RemarkSequence connection from [Priest J, Allen TS]. krb 13/11/01
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene