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WormBase Tree Display for Gene: WBGene00004979

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Name Class

WBGene00004979SMapS_parentSequenceF42G8
IdentityVersion1
NameCGC_namesph-1Person_evidenceWBPerson451
Sequence_nameF42G8.11
Molecular_nameF42G8.11
F42G8.11.1
CE40059
Other_nameCELE_F42G8.11Accession_evidenceNDBBX284604
Public_namesph-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsph
Allele (23)
StrainWBStrain00031923
WBStrain00036200
WBStrain00003813
RNASeq_FPKM (74)
GO_annotation00032640
00032641
00032642
00032643
00032644
00113388
00113389
Ortholog (43)
Structured_descriptionConcise_descriptionsph-1 encodes a member of the synaptophysin/synaptoporin family that contains a MARVEL domain, a membrane-associating domain found in lipid-associating proteins, and contains a transmembrane domain.Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionLocated in cytoplasmic vesicle. Expressed in anal sphincter muscle and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in Alzheimer's disease and non-syndromic X-linked intellectual disability 96. Is an ortholog of human SYNPR (synaptoporin) and SYPL1 (synaptophysin like 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (2)
Molecular_infoCorresponding_CDSF42G8.11
Corresponding_CDS_historyF42G8.11:wp156
Corresponding_transcriptF42G8.11.1
Other_sequence (24)
Associated_featureWBsf651983
WBsf651984
WBsf668084
WBsf230386
Experimental_infoRNAi_resultWBRNAi00047123Inferred_automaticallyRNAi_primary
WBRNAi00014841Inferred_automaticallyRNAi_primary
WBRNAi00032152Inferred_automaticallyRNAi_primary
Expr_patternExpr3982
Expr1020981
Expr1032477
Expr1150991
Expr2016054
Expr2034289
Drives_constructWBCnstr00011795
WBCnstr00035295
Construct_productWBCnstr00035295
Microarray_results (18)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00031040:Cluster_5
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_upregulated_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050448:KGB-1-induced
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00054192:cold-shock_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058948:PA14_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061340:g2_parent
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:Parent_of_K_Kprime
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061341:28C_24h_upregulated
WBPaper00061466:nath-10(icb99)_downregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_upregulated_N2_protein
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065841:30_4
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4386_cluster_3_4
WBPaper00025032:cluster_63
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00034757:up_by_oxidative_stress
WBPaper00035873:dpy-10_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_I
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038304:octr-1_regulated
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00050407:hsp-6(RNAi)_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_5
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_B
InteractionWBInteraction000120132
WBInteraction000122897
WBInteraction000122898
WBInteraction000134602
WBInteraction000166894
WBInteraction000180665
WBInteraction000193904
WBInteraction000428878
WBInteraction000444399
Map_infoMapIVPosition3.61293Error0.001689
PositivePositive_cloneF42G8Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4986
4448
5613
Pseudo_map_position
ReferenceWBPaper00027627
WBPaper00028886
WBPaper00031849
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene