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WormBase Tree Display for Gene: WBGene00004443

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Name Class

WBGene00004443SMapS_parentSequenceB0513
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classrpl
Allele (23)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl29 using blastP
NMK. 0.6 kb transcript, transspliced to SL1;encodes predicted ribosomal protein (87%identical to yeast).[Bektesh et al. 1988; DH]
StrainWBStrain00005441
WBStrain00050657
RNASeq_FPKM (74)
GO_annotation00007523
00007524
00007525
00007526
00034046
00034047
00112889
00112890
00112891
Contained_in_operonCEOP4568
Ortholog (25)
Structured_descriptionConcise_descriptionrpl-29 encodes a large ribosomal subunit L29 protein; by homology, RPL-29 is predicted to function in protein biosynthesis; in C. elegans, loss of rpl-29 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities.Paper_evidenceWBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL29 (ribosomal protein L29).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0513.3a
B0513.3b
Corresponding_transcriptB0513.3a.1
B0513.3b.1
Associated_featureWBsf646542
WBsf646543
WBsf981844
WBsf998474
WBsf1018579
WBsf229463
WBsf229464
Experimental_infoRNAi_resultWBRNAi00009830Inferred_automaticallyRNAi_primary
WBRNAi00093769Inferred_automaticallyRNAi_primary
WBRNAi00039155Inferred_automaticallyRNAi_primary
Expr_patternExpr15108
Expr1023321
Expr1032247
Expr1143310
Expr2015460
Expr2033695
Drives_constructWBCnstr00035482
WBCnstr00039102
Construct_productWBCnstr00035482
WBCnstr00039102
Microarray_results (24)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040285:H2S_24hr_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046161:Q40-aggregate-protein_Day7_Sarcosyl-soluble
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_downregulated_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050234:lin-28(RNAi)_downregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F1_hrde-1(tm1200)_upregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053814:OP50_vs_PY79_downregulated_PY79
WBPaper00055049:S.gordonii_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056718:F01D4.5(baf20)_downregulated
WBPaper00056826:SGP_biased
WBPaper00056900:PID-3_interacting
WBPaper00056900:TOFU-6_interacting
WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059605:MUT-16_interacting
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:rps-14_21270-rps-11_20714
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061651:ADA_enriched
WBPaper00061651:CAN_enriched
WBPaper00061651:Distal_tip_cell_enriched
WBPaper00061651:Germline_enriched
WBPaper00061651:M2_enriched
WBPaper00061651:PVC_enriched
WBPaper00061651:RID_enriched
WBPaper00061651:RIG_enriched
WBPaper00061651:RIH_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062056:lin-35(n745)_downregulated
WBPaper00062143:PQN-59_interacting
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064952:Day10_vs_L4_downregulated_25C
WBPaper00064992:Capsaicin_downregulated
WBPaper00064992:Eugenol_downregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066085:hda-3(ok1991)_downregulated
WBPaper00066085:sin-3(syb2172)_downregulated
cgc4386_cluster_2_6
cgc4489_group_2
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025032:cluster_107
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00035479:daf-16(RNAi)_upregulated
WBPaper00036286:Pattern_F
WBPaper00037695:WC_CC_6-day
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
[cgc5767]:cluster_16
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(41_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
Interaction (130)
Map_infoMapIVPosition10.8984Error0.001533
PositivePositive_cloneB0513Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00002874
WBPaper00025088
WBPaper00035149
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene