WormBase Tree Display for Gene: WBGene00003692

WBGene00003692 SMap: S_parent: Sequence: T06C12
  Identity: Version: 1
    Name: CGC_name: nhr-102 Person_evidence: WBPerson600
      Sequence_name: T06C12.6
      Molecular_name: T06C12.6
        T06C12.6.1
        CE16356
      Other_name: CELE_T06C12.6 Accession_evidence: NDB BX284605
      Public_name: nhr-102
    DB_info: Database: AceView gene 5Q354
        WormQTL gene WBGene00003692
        WormFlux gene WBGene00003692
        NDB locus_tag CELE_T06C12.6
        Panther gene CAEEL|WormBase=WBGene00003692|UniProtKB=Q9XVJ1
          family PTHR45680
        NCBI gene 180062
        RefSeq protein NM_074566.7
        TrEMBL UniProtAcc Q9XVJ1
        UniProt_GCRP UniProtAcc Q9XVJ1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (35)
    Strain: WBStrain00035353
      WBStrain00030227
    RNASeq_FPKM (74)
    GO_annotation: 00102530
      00102531
      00102532
      00111565
      00111566
      00111567
      00111568
    Contained_in_operon: CEOP5448
    Ortholog (38)
    Paralog (217)
    Structured_description: Concise_description: nhr-102 encodes a nuclear receptor that is most highly conserved amongst nematode species. Paper_evidence: WBPaper00027309
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 May 2007 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T06C12.6
    Corresponding_transcript: T06C12.6.1
    Other_sequence: EV854163.1
    Associated_feature: WBsf978525
      WBsf1002357
      WBsf1002358
      WBsf1021066
      WBsf1021067
      WBsf1021068
      WBsf235093
      WBsf235094
    Transcription_factor: WBTranscriptionFactor000362
  Experimental_info: RNAi_result: WBRNAi00052631 Inferred_automatically: RNAi_primary
      WBRNAi00052630 Inferred_automatically: RNAi_primary
      WBRNAi00084690 Inferred_automatically: RNAi_primary
      WBRNAi00033601 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram105
      Expr7653
      Expr1016890
      Expr1031719
      Expr1156234
      Expr2013999
      Expr2032239
    Drives_construct: WBCnstr00001163
      WBCnstr00012798
      WBCnstr00035941
    Construct_product (3)
    Microarray_results (18)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044037:eat-2_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00046338:intestine_unique
      WBPaper00048988:neuron_expressed
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057154:HeatShock_downregulated_miRNA-target
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:I1_parent
      WBPaper00061527:acy-2-F35C5.11
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:etr-1(lq61)_upregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066085:sin-3(tm1276)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00034739:N2moreDR1350
      WBPaper00036286:Pattern_B
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction (25)
  Map_info: Map: V Position: 9.0507 Error: 0.007464
    Positive: Positive_clone: T06C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5343
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00050371
    WBPaper00061738
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene