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WormBase Tree Display for Gene: WBGene00001972

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Name Class

WBGene00001972SMapS_parentSequenceF47D12
IdentityVersion1
NameCGC_namehmg-1.2
Sequence_nameF47D12.4
Molecular_name (9)
Other_nameson-1CGC_data_submission
CELE_F47D12.4Accession_evidenceNDBBX284603
Public_namehmg-1.2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhmg
Allele (28)
StrainWBStrain00001623
WBStrain00030872
WBStrain00030873
WBStrain00030879
WBStrain00036586
RNASeq_FPKM (74)
GO_annotation (14)
Ortholog (61)
ParalogWBGene00001973Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001974Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008081Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012209Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022182Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnables transcription cis-regulatory region binding activity. Involved in several processes, including gonad development; positive regulation of transcription by RNA polymerase II; and vulval development. Located in nucleus. Expressed in several structures, including tail. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; cerebral infarction; and syndromic microphthalmia 13. Is an ortholog of human HMGB3 (high mobility group box 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:6000Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4983)
DOID:332Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4983)
DOID:0111811Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5004)
DOID:3526Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4983)
DOID:13378Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4983)
DOID:418Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4983)
Molecular_infoCorresponding_CDSF47D12.4a
F47D12.4b
F47D12.4c
Corresponding_transcriptF47D12.4a.1
F47D12.4b.1
F47D12.4c.1
Other_sequence (117)
Associated_feature (13)
Transcription_factorWBTranscriptionFactor000385
Experimental_infoRNAi_result (45)
Expr_pattern (12)
Drives_constructWBCnstr00002462
WBCnstr00002481
WBCnstr00003263
WBCnstr00012419
WBCnstr00015261
WBCnstr00017071
WBCnstr00019876
WBCnstr00036551
Construct_productWBCnstr00012419
WBCnstr00019997
WBCnstr00019999
WBCnstr00036551
Microarray_results (34)
Expression_clusterWBPaper00028867:PAL-1_induced_TF
WBPaper00029359_1197
WBPaper00029359_1225
WBPaper00029359_1291
WBPaper00029359_1367
WBPaper00029359_1483
WBPaper00029359_1494
WBPaper00029359_1546
WBPaper00029359_1561
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_zfp-1
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037055:DAF-16_binding_DNA
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00048988:neuron_expressed
WBPaper00050514:CEBP-1_interacting
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00052987:UV_upregulated_xpc-1;csb-1
WBPaper00053289:DREAM-target
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00055482:Tunicamycin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:germline_expressed
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056619:CEPsh_enriched
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061340:ADL_parent
WBPaper00061340:AMso_parent
WBPaper00061340:ASE_parent
WBPaper00061340:ASI_parent
WBPaper00061340:ASK_parent
WBPaper00061340:AVH_parent
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:g2_parent
WBPaper00061340:GLR
WBPaper00061340:IL1_parent
WBPaper00061340:M1_parent
WBPaper00061340:M4_parent
WBPaper00061340:Neuroblast_ADE_ADA
WBPaper00061340:Neuroblast_ADF_AWB
WBPaper00061340:Neuroblast_AFD_RMD
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_ASG_AWA
WBPaper00061340:Neuroblast_ASH_RIB
WBPaper00061340:Neuroblast_AVG_RIR
WBPaper00061340:Neuroblast_AWC_SAAVx
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061340:Neuroblast_M2_M3
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061340:Neuroblast_URX_CEPDx
WBPaper00061340:NSM_parent
WBPaper00061340:OLL_parent
WBPaper00061340:OLQ_parent
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061340:Parent_of_exc_gland_AVK
WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
WBPaper00061340:Parent_of_hyp3_ILsoDx
WBPaper00061340:Parent_of_K_Kprime
WBPaper00061340:Parent_of_MI_pm1DR
WBPaper00061340:Pharyngeal_neuron
WBPaper00061340:PVQ_parent
WBPaper00061340:RIA_parent
WBPaper00061340:RIC_parent
WBPaper00061340:RIM_parent
WBPaper00061340:RME_LR_parent
WBPaper00061340:URA_parent
WBPaper00061527:cdc-42_17192-rab-5_18073
WBPaper00061527:cids-2_2203-attf-2_2451
WBPaper00061527:utx-1_2886-swan-1_2192
WBPaper00061651:Coelomocyte_enriched
WBPaper00062143:PQN-59_interacting
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064789:Day9_vs_Day1_downregulated_neuron
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4386_cluster_6_4
WBPaper00025032:cluster_30
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031832:slr-2_regulated
WBPaper00034739:N2moreDR1350
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035905:FBF-1_Associated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:TA300_down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_E
[cgc6390]:mixed_oogenesis-somatic
Interaction (312)
WBProcessWBbiopr:00000071
WBbiopr:00000072
Map_infoMapIIIPosition-1.40577Error0.000741
PositivePositive_cloneF47D12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4334
4407
Pseudo_map_position
Reference (13)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene