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WormBase Tree Display for Gene: WBGene00001638

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Name Class

WBGene00001638SMapS_parentSequenceB0416
IdentityVersion1
NameCGC_namegly-13Person_evidenceWBPerson228
Sequence_nameB0416.6
Molecular_nameB0416.6
B0416.6.1
CE26434
Other_nameCELE_B0416.6Accession_evidenceNDBBX284606
Public_namegly-13
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgly
Allele (65)
StrainWBStrain00031584
WBStrain00000250
RNASeq_FPKM (74)
GO_annotation (21)
Ortholog (39)
ParalogWBGene00001637Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001639Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00016402Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionConcise_descriptiongly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates; gly-13 is expressed throughout development in many cell types; a deletion allele of gly-13 is partially lethal with survivors displaying severe morphological and behavioral defects.Paper_evidenceWBPaper00003352
WBPaper00005672
WBPaper00005889
WBPaper00005927
WBPaper00024538
WBPaper00005572
Curator_confirmedWBPerson567
Date_last_updated10 Apr 2012 00:00:00
Automated_descriptionPredicted to enable alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Located in perinuclear region of cytoplasm. Expressed in several structures, including ganglia; intestine; muscle cell; ventral nerve cord; and vulva. Is an ortholog of human MGAT1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0416.6
Corresponding_CDS_historyB0416.6:wp115
Corresponding_transcriptB0416.6.1
Other_sequence (27)
Associated_feature (3)
Experimental_infoRNAi_resultWBRNAi00065494Inferred_automaticallyRNAi_primary
WBRNAi00009770Inferred_automaticallyRNAi_primary
WBRNAi00039049Inferred_automaticallyRNAi_primary
WBRNAi00065495Inferred_automaticallyRNAi_primary
Expr_patternExpr652
Expr653
Expr1024537
Expr1030984
Expr1143211
Expr2012135
Expr2030371
Drives_constructWBCnstr00012476
WBCnstr00036806
Construct_productWBCnstr00036806
Microarray_results (20)
Expression_clusterWBPaper00032976:dosage_compensated_genes
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00041071:spe-44_downregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044246:pgrn-1_ced-3_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-4(RNAi)_upregulated
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050094:mes-2(bn11)_upregulated
WBPaper00050094:mes-6(bn66)_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051265:F1_hrde-1(tm1200)_upregulated
WBPaper00051265:F1_morc-1(tm6048)_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_embryo_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053814:15C_downregulated_PY79
WBPaper00053814:25C_upregulated_OP50
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
WBPaper00057140:pptr-1(tm3103)_upregulated
WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
WBPaper00057162:meg-3_meg-4_downregulated_sRNA
WBPaper00057254:MWCNT_downregulated_mRNA
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060661:sensory-neuron_depleted
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:FLP
WBPaper00061340:g1A
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:hda-1(ne4748)_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:cdc-42_17192-rab-5_18073
WBPaper00061527:nhr-46_2300-unc-108_2961
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_upregulated_CB4856_protein
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064721:fasn-1(g14)_upregulated_starved
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4489_group_7
WBPaper00025032:cluster_179
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028483:Up_mes-4_vs_WT
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00034739:N2moreDR1350
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_9
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(186_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_ME
InteractionWBInteraction000126355
WBInteraction000126356
WBInteraction000126357
WBInteraction000228041
WBInteraction000289327
WBInteraction000372458
WBInteraction000378493
WBInteraction000382203
WBInteraction000442766
WBProcessWBbiopr:00000039
Map_infoMapXPosition0.997171Error0.021005
PositivePositive_cloneB0416Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4361
4378
5438
Pseudo_map_position
Reference (17)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene