| WBGene00001091 | SMap | S_parent | Sequence | C01B10 |
|---|
| Identity | Version | 2 |
| | Name | CGC_name | drh-2 | Person_evidence | WBPerson419 |
| | | Sequence_name | C01B10.1 |
| | | Molecular_name | C01B10.1 |
| | | Other_name | CELE_C01B10.1 | Accession_evidence | NDB | BX284604 |
| | | Public_name | drh-2 |
| | DB_info | Database | AceView | gene | 4H380 |
| | | | WormQTL | gene | WBGene00001091 |
| | | | NDB | locus_tag | CELE_C01B10.1 |
| | | | NCBI | gene | 177426 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | | | 2 | 04 Oct 2007 11:45:18 | WBPerson1849 | Event | Changed_class | CDS | Pseudogene |
| | Status | Live |
| Gene_info | Biotype | SO:0000336 |
| | Gene_class | drh |
| | Allele (99) |
| | Strain | WBStrain00031732 |
| | RNASeq_FPKM (74) |
| | Contained_in_operon | CEOP4647 |
| | Ortholog | WBGene00027855 | Caenorhabditis briggsae | From_analysis | OrthoMCL |
| | Paralog | WBGene00001090 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes |
| | Structured_description | Concise_description | drh-2 was identified, along with drh-1, as a gene that can encode a protein with similarity to DExH-box helicases; drh-2, however, is classified by WB as a pseudogene because it has two frameshifts, based on EST and RNASeq alignments; the first frameshift occurs in exon 4 and the second occurs in exon 8 of the current WB gene structure; drh-2 appears to be the first gene in an operon (CEOP4647) followed by drh-1 and nstp-2. | Paper_evidence | WBPaper00005368 |
| | | | | Curator_confirmed | WBPerson1843 |
| | | | | Date_last_updated | 12 Feb 2014 00:00:00 |
| | | Automated_description | Enriched in intestine; muscle cell; and neurons based on microarray and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and rrf-3 based on proteomic; microarray; and RNA-seq studies. Is affected by twelve chemicals including rotenone; levamisole; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed (2) |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS_history | C01B10.1:wp92 |
| | | C01B10.1:wp183 |
| | Corresponding_pseudogene | C01B10.1 |
| | Other_sequence | JI175259.1 |
| | | FG621043.1 |
| Experimental_info | Expr_pattern | Expr3877 |
| | Drives_construct | WBCnstr00011709 |
| | Microarray_results | SMD_C01B10.1 |
| | | 185299_s_at |
| | | A_12_P135120 |
| | | A_12_P135121 |
| | | Aff_C01B10.1 |
| | | GPL19516_CGZ0001567 |
| | | GPL21109_C01B10.1 |
| | | GPL8304_CE_WBGene00001091_A |
| | | GPL8673_C01B10_1P00492 |
| | Expression_cluster | WBPaper00027057:DCR-1_interacting_adult |
| | | WBPaper00027057:DCR-1_interacting_embryo |
| | | WBPaper00032031:DConiospora_upregulated_cDNA_24h |
| | | WBPaper00032425:up_in_lin-35 |
| | | WBPaper00036375:enriched_in_PVD_OLL |
| | | WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray |
| | | WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray |
| | | WBPaper00042215:wdr-23(tm1817)_upregulated |
| | | WBPaper00044037:eat-2_upregulated |
| | | WBPaper00044426:rotenone_24h_upregulated |
| | | WBPaper00044743:wdr-23_neuron_upregulated |
| | | WBPaper00045521:Gender_Neutral |
| | | WBPaper00045774:clk-1_downregulated |
| | | WBPaper00045861:wdr-5(ok1417)_upregulated |
| | | WBPaper00047132:glp-1(ts)-25C_upregulated |
| | | WBPaper00049498:npr-1(ur89)_regulated_7 |
| | | WBPaper00050053:muscle_enriched_Day4 |
| | | WBPaper00050726:OsmoticStress_regulated_NoFood |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult |
| | | WBPaper00051257:Levamisole_upregulated |
| | | WBPaper00053184:sma-2(rax5)_upregulated |
| | | WBPaper00053184:sma-4(rax3)_upregulated |
| | | WBPaper00053388:dauer_regulated_Cluster1 |
| | | WBPaper00053810:nuo-6(qm200)_upregulated |
| | | WBPaper00054758:alg-1(gk204)_upregulated |
| | | WBPaper00055060:flr-1(RNAi)_upregulated |
| | | WBPaper00055354:eat-2(ad1116)_downregulated |
| | | WBPaper00055354:Psora-Allantoin_downregulated |
| | | WBPaper00055354:Rapamycin-Metformin_downregulated |
| | | WBPaper00055354:Rifampicin-Allantoin_downregulated |
| | | WBPaper00055941:atfs-1(et15)_upregulated |
| | | WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated |
| | | WBPaper00055941:nuo-6(qm200)_upregulated |
| | | WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047) |
| | | WBPaper00056090:E.faecalis_upregulated_N2 |
| | | WBPaper00056139:soil-microbiota_downregulated |
| | | WBPaper00056169:rrf-3(pk1426)_upregulated_embryo |
| | | WBPaper00056443:sek-1(km4)_upregulated |
| | | WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1 |
| | | WBPaper00056855:his-72(uge40)_upregulated |
| | | WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C |
| | | WBPaper00058598:sin-3(tm1276)_downregulated |
| | | WBPaper00058942:henn-1(pk2295)_upregulated |
| | | WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA |
| | | WBPaper00059440:LAG-1_activated_48hr-auxin |
| | | WBPaper00059566:wdr-23(mac32)_upregulated |
| | | WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus |
| | | WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi) |
| | | WBPaper00060459:bcat-1(RNAi)_upregulated |
| | | WBPaper00060661:sensory-neuron_enriched |
| | | WBPaper00060683:hlh-11(ko1)_upregulated |
| | | WBPaper00061007:HB101_upregulated |
| | | WBPaper00061007:S.aquatilis_upregulated |
| | | WBPaper00061203:sin-3(tm1276)_upregulated |
| | | WBPaper00061203:spr-1(ok2144)_upregulated |
| | | WBPaper00061274:hypergravity_15xg_downregulated |
| | | WBPaper00061439:unc-30(ok613)_downregulated |
| | | WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection |
| | | WBPaper00061527:F12A10.2-F59E12.6 |
| | | WBPaper00062159:hda-2(ok1479)_upregulated |
| | | WBPaper00062345:bortezomib_4h_upregulated_N2 |
| | | WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13) |
| | | WBPaper00062440:crh-1(n3315)_upregulated |
| | | WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064156:lipl-4(overexpress)_upregulated |
| | | WBPaper00064716:paraquat_downregulated |
| | | WBPaper00064727:daf-2(e1370)_upregulated |
| | | WBPaper00065029:cadmium_upregulated |
| | | WBPaper00065149:lin-52(n771)_upregulated |
| | | WBPaper00065734:unc-25(e156)_upregulated |
| | | WBPaper00065975:P-body_vs_oocyte_depleted |
| | | WBPaper00065975:P-body_vs_WholeAnimal_depleted |
| | | WBPaper00066062:xrep-4(lax137)_upregulated |
| | | WBPaper00066110:tetraploid_vs_diploid_upregulated |
| | | cgc4489_group_17 |
| | | WBPaper00025032:cluster_123 |
| | | WBPaper00025099:MA_specific |
| | | WBPaper00025141:N2_Expressed_Genes |
| | | WBPaper00025141:unc-4::GFP_Expressed_Genes |
| | | WBPaper00026980:intestine_enriched |
| | | WBPaper00027111:rrf-1(pk1417)_upregulated |
| | | WBPaper00030839:Embryo_Pan_Neuronal |
| | | WBPaper00031832:slr-2_regulated |
| | | WBPaper00032948:StarveUp3 |
| | | WBPaper00034757:up_by_oxidative_stress |
| | | WBPaper00036383:ash-2_Day8_regulated |
| | | WBPaper00040963:Q100_up |
| | | WBPaper00041939:control_vs_EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_48h |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_51h |
| | | WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h |
| | | WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h |
| | | WBPaper00042331:a-SWCNTs_downregulated |
| | | WBPaper00044091:Bpseudomallei_induced_8h |
| | | WBPaper00045263:0.1mM-paraquat_downregulated |
| | | WBPaper00047070:N2_starvation_upregulated |
| | | WBPaper00048989:N2_allantoin_downregulated |
| | Interaction | WBInteraction000543336 |
| | | WBInteraction000543408 |
| Map_info | Map | IV | Position | 3.21701 | Error | 0.000976 |
| | Positive | Positive_clone | C01B10 | Inferred_automatically | From CDS info |
| | | | | | From sequence, transcript, pseudogene data |
| | Mapping_data | Multi_point | 4840 |
| | | | 4804 |
| | Pseudo_map_position |
| Reference | WBPaper00005368 |
| | WBPaper00024434 |
| | WBPaper00027057 |
| | WBPaper00031962 |
| | WBPaper00032883 |
| | WBPaper00035245 |
| | WBPaper00042632 |
| | WBPaper00044120 |
| | WBPaper00044196 |
| | WBPaper00046788 |
| Remark | Sequence connection from [Tabara H, Siomi S, Mello CC], [krb 020710] |
| | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |
