WormBase Tree Display for Gene: WBGene00012853

WBGene00012853 SMap: S_parent: Sequence: Y44A6D
  Identity: Version: 2
    Name: CGC_name: tpan-1 Person_evidence: WBPerson260
      Sequence_name: Y44A6D.2
      Molecular_name: Y44A6D.2
        Y44A6D.2.1
        CE19160
      Other_name: CELE_Y44A6D.2 Accession_evidence: NDB BX284605
      Public_name: tpan-1
    DB_info: Database: AceView gene 5V259
        WormQTL gene WBGene00012853
        WormFlux gene WBGene00012853
        NDB locus_tag CELE_Y44A6D.2
        NCBI gene 180360
        RefSeq protein NM_075610.6
        TREEFAM TREEFAM_ID TF319510
        TrEMBL UniProtAcc Q9XXE2
        UniProt_GCRP UniProtAcc Q9XXE2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 16 Feb 2022 12:47:28 WBPerson51134 Name_change: CGC_name: tpan-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tpan
    Allele (33)
    Strain: WBStrain00051866
    RNASeq_FPKM (74)
    Ortholog (22)
    Structured_description: Automated_description: Enriched in head mesodermal cell; intestine; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and eat-2 based on proteomic; microarray; and RNA-seq studies. Is affected by sixteen chemicals including rotenone; sesamin; and iron oxide nanoparticle based on RNA-seq; microarray; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y44A6D.2
    Corresponding_transcript: Y44A6D.2.1
    Other_sequence: TDC02072_1
      Hbac_isotig05826
      CR05612
      Acan_isotig02619
      FD515457.1
      BU086750.1
      AE00438
      Dviv_isotig29586
      CBC03857_1
      HBC06122_1
      FD515458.1
      CB036302.1
      EX827933.1
      BU087389.1
      FG971207.1
      CSC00717_1
      HCC10213_1
      ES743458.1
      AYC02465_1
      HBC11788_1
      ACC02300_1
      NAC01427_1
      HC08380
      Oden_isotig24688
      EX827681.1
      CRC00016_1
      EX014192.1
    Associated_feature: WBsf647764
      WBsf1003647
      WBsf1022015
  Experimental_info: RNAi_result: WBRNAi00000858 Inferred_automatically: RNAi_primary
      WBRNAi00020580 Inferred_automatically: RNAi_primary
      WBRNAi00056549 Inferred_automatically: RNAi_primary
      WBRNAi00037073 Inferred_automatically: RNAi_primary
      WBRNAi00002038 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019748
      Expr1160022
      Expr2007529
      Expr2025766
    Drives_construct: WBCnstr00029815
    Construct_product: WBCnstr00029815
    Microarray_results (19)
    Expression_cluster: WBPaper00024970:GABAergic_neuron_specific
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032009:nhr-40(ok667)_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_12h
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:BAG-neuron_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_Day5
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049001:EVN_enriched
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050442:P.aeruginosa_regulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050496:RID_enriched
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050843:sesamin_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051437:Cit-SPIONs_downregulated
      WBPaper00051461:pig-1(gm344)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:male-tail_expressed
      WBPaper00055648:nerve-ring_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057149:prgn-1(tm985)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061210:huIs179_upregulated
      WBPaper00061274:microgravity_downregulated
      WBPaper00061340:ADF
      WBPaper00061340:AFD
      WBPaper00061340:AIA
      WBPaper00061340:AIB
      WBPaper00061340:AIN
      WBPaper00061340:AIY
      WBPaper00061340:AIZ
      WBPaper00061340:ALM_PLM
      WBPaper00061340:ASE
      WBPaper00061340:ASG
      WBPaper00061340:ASH
      WBPaper00061340:AVA
      WBPaper00061340:AVB
      WBPaper00061340:AVG
      WBPaper00061340:AVH
      WBPaper00061340:AVK
      WBPaper00061340:AVL
      WBPaper00061340:BAG
      WBPaper00061340:CEP
      WBPaper00061340:DA_DB
      WBPaper00061340:DD
      WBPaper00061340:DVA
      WBPaper00061340:DVC
      WBPaper00061340:IL1
      WBPaper00061340:IL2
      WBPaper00061340:OLL
      WBPaper00061340:OLQ
      WBPaper00061340:PVP
      WBPaper00061340:PVT
      WBPaper00061340:RIA
      WBPaper00061340:RIB
      WBPaper00061340:RIM
      WBPaper00061340:RIS
      WBPaper00061340:RMD
      WBPaper00061340:RME
      WBPaper00061340:SMD
      WBPaper00061340:URX
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:R07G3.8_9125-ric-4_17408
      WBPaper00061651:ADE_enriched
      WBPaper00061651:AIB_enriched
      WBPaper00061651:AIZ_enriched
      WBPaper00061651:ALA_enriched
      WBPaper00061651:ALN_enriched
      WBPaper00061651:AS_enriched
      WBPaper00061651:AVA_enriched
      WBPaper00061651:AVB_enriched
      WBPaper00061651:AVD_enriched
      WBPaper00061651:AVE_enriched
      WBPaper00061651:AVF_enriched
      WBPaper00061651:AVK_enriched
      WBPaper00061651:CEP_enriched
      WBPaper00061651:DA_enriched
      WBPaper00061651:DB01_enriched
      WBPaper00061651:DB_enriched
      WBPaper00061651:DVA_enriched
      WBPaper00061651:DVC_enriched
      WBPaper00061651:FLP_enriched
      WBPaper00061651:HSN_enriched
      WBPaper00061651:IL1_enriched
      WBPaper00061651:LUA_enriched
      WBPaper00061651:NSM_enriched
      WBPaper00061651:OLL_enriched
      WBPaper00061651:PDE_enriched
      WBPaper00061651:PHC_enriched
      WBPaper00061651:PVC_enriched
      WBPaper00061651:PVD_enriched
      WBPaper00061651:PVP_enriched
      WBPaper00061651:PVQ_enriched
      WBPaper00061651:PVW_enriched
      WBPaper00061651:RIA_enriched
      WBPaper00061651:RIC_enriched
      WBPaper00061651:RID_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00061651:RIM_enriched
      WBPaper00061651:RMD_DV_enriched
      WBPaper00061651:RMD_LR_enriched
      WBPaper00061651:RME_DV_enriched
      WBPaper00061651:RME_LR_enriched
      WBPaper00061651:SAB_enriched
      WBPaper00061651:URA_enriched
      WBPaper00061651:URY_enriched
      WBPaper00061651:VA12_enriched
      WBPaper00061651:VA_enriched
      WBPaper00061651:VC_4_5_enriched
      WBPaper00061651:VC_enriched
      WBPaper00061651:VD_DD_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_downregulated_N2_protein
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064992:Capsaicin_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:33
      WBPaper00065623:43
      WBPaper00065623:80
      WBPaper00065623:128
      WBPaper00065623:152
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065841:10_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4386_cluster_1_6
      cgc4489_group_13
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036286:Pattern_C
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040876:mir-35_downregulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00042548:miRISC_enriched
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048563:L1_DD_enriched
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_A
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000376125
      WBInteraction000383303
      WBInteraction000389067
      WBInteraction000428253
      WBInteraction000580835
      WBInteraction000583623
      WBInteraction000583994
  Map_info: Map: V Position: 25.2229
    Positive: Positive_clone: Y44A6D Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00040135
    WBPaper00062568
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene