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WormBase Tree Display for Gene: WBGene00016624

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Name Class

WBGene00016624SMapS_parentSequenceC44B7
IdentityVersion2
NameCGC_namehrpl-1Person_evidenceWBPerson260
Sequence_nameC44B7.2
Molecular_nameC44B7.2a
C44B7.2a.1
CE34752
C44B7.2b
CE25812
C44B7.2a.2
C44B7.2b.1
Other_nameCELE_C44B7.2Accession_evidenceNDBBX284602
Public_namehrpl-1
DB_infoDatabaseAceViewgene2H191C
2H191
WormQTLgeneWBGene00016624
WormFluxgeneWBGene00016624
NDBlocus_tagCELE_C44B7.2
PanthergeneCAEEL|WormBase=WBGene00016624|UniProtKB=Q95QR5
familyPTHR15592
NCBIgene3565706
RefSeqproteinNM_063011.6
NM_001393108.1
TREEFAMTREEFAM_IDTF354318
TrEMBLUniProtAccQ95QR5
Q95QR6
UniProt_GCRPUniProtAccQ95QR5
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
207 Dec 2017 13:24:47WBPerson1983Name_changeCGC_namehrpl-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhrpl
Allele (38)
RNASeq_FPKM (74)
GO_annotation00088566
00088567
00088568
00088569
00088570
00122200
00122201
00122202
00122203
Contained_in_operonCEOP2264
OrthologWBGene00032343Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00054201Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00145504Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190274Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00128858Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00113266Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00223000Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7227Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3935Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4446Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1248Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17425Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11390Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18131Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g67Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g8918Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15064Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19911Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8442Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00046.g2456Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00046.g2457Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06719.g20443Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-C44B7.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12109Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00307.g9132Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21609Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006368Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11437Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4579Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20267320Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4889Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00255448Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00256846Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289371Trichuris murisFrom_analysisWormBase-Compara
WBGene00294420Trichuris murisFrom_analysisWormBase-Compara
WBGene00294973Trichuris murisFrom_analysisWormBase-Compara
WBGene00296248Trichuris murisFrom_analysisWormBase-Compara
WBGene00296252Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0003435Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
SonicParanoid
ZFIN:ZDB-GENE-040426-710Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-2707Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:5045Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:25127Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:104816Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1919942Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:71059Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1305861Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1359551Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00004207Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Sertoli cell-only syndrome; hepatocellular carcinoma; and systemic scleroderma. Is an ortholog of human HNRNPLL (heterogeneous nuclear ribonucleoprotein L like).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050457Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5045)
DOID:1324Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5045)
DOID:1319Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5045)
DOID:684Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5045)
DOID:418Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5045)
Molecular_infoCorresponding_CDSC44B7.2a
C44B7.2b
Corresponding_CDS_historyC44B7.2:wp21
C44B7.2a:wp104
Corresponding_transcriptC44B7.2a.1
C44B7.2a.2
C44B7.2b.1
Other_sequence (28)
Associated_featureWBsf644335
WBsf221520
Experimental_infoRNAi_resultWBRNAi00102169Inferred_automaticallyRNAi_primary
WBRNAi00042427Inferred_automaticallyRNAi_primary
WBRNAi00011909Inferred_automaticallyRNAi_primary
WBRNAi00042426Inferred_automaticallyRNAi_primary
WBRNAi00076213Inferred_automaticallyRNAi_primary
WBRNAi00061751Inferred_automaticallyRNAi_primary
WBRNAi00033365Inferred_automaticallyRNAi_primary
WBRNAi00062160Inferred_automaticallyRNAi_primary
Expr_patternExpr1020702
Expr1037145
Expr1146416
Expr2001616
Expr2019840
Drives_constructWBCnstr00027929
Construct_productWBCnstr00027929
Microarray_results (36)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037682:sma-2_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045303:ZK1236.1(tm4178)_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049177:rpn-10(ok1865)_upregulated
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_72h_regulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:AFFX-r2-3487-3_s_at-tba-1
WBPaper00061527:ZK792.5-T26G10.1
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062554:MAGU-2_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064502:spe-44(fx110)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065158:AFD_enriched
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025032:cluster_7
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00036123:Cadmium_regulated
WBPaper00037695:WC_5-day
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040963:TA200_down
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00048989:N2_allantoin_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:intrinsic
Interaction (12)
Map_infoMapIIPosition0.137677
PositivePositive_cloneC44B7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[210510 skd] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.13752)
MethodGene