WormBase Tree Display for Gene: WBGene00011740

WBGene00011740 SMap: S_parent: Sequence: T12G3
  Identity: Version: 2
    Name: CGC_name: mrpl-51 Person_evidence: WBPerson261
      Sequence_name: T12G3.5
      Molecular_name: T12G3.5
        T12G3.5.1
        CE06441
      Other_name: CELE_T12G3.5 Accession_evidence: NDB BX284604
      Public_name: mrpl-51
    DB_info: Database: AceView gene 4M795
        WormQTL gene WBGene00011740
        WormFlux gene WBGene00011740
        NDB locus_tag CELE_T12G3.5
        Panther gene CAEEL|WormBase=WBGene00011740|UniProtKB=Q22438
          family PTHR13409
        NCBI gene 188457
        RefSeq protein NM_069878.8
        SwissProt UniProtAcc Q22438
        TREEFAM TREEFAM_ID TF106130
        UniProt_GCRP UniProtAcc Q22438
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-51
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (18)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00028519 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00156734 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00066321 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00183749 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226017 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11481 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11204 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13458 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11002 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7697 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6473 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11056 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17347 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12121 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17582 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00069.g3323 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mrpl-51 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11862 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01230.g19433 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_014220 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01290 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2630 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40235600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11981 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245212 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264140 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285650 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0032053 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050320-40 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:14044 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1913743 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1306686 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL51 (mitochondrial ribosomal protein L51). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T12G3.5
    Corresponding_transcript: T12G3.5.1
    Other_sequence (44)
    Associated_feature: WBsf998014
      WBsf1018312
      WBsf1018313
      WBsf229232
  Experimental_info: RNAi_result: WBRNAi00035521 Inferred_automatically: RNAi_primary
      WBRNAi00053229 Inferred_automatically: RNAi_primary
      WBRNAi00009166 Inferred_automatically: RNAi_primary
      WBRNAi00071819 Inferred_automatically: RNAi_primary
      WBRNAi00071478 Inferred_automatically: RNAi_primary
      WBRNAi00061600 Inferred_automatically: RNAi_primary
      WBRNAi00026285 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012026
      Expr1035165
      Expr1156813
      Expr2013728
      Expr2031963
    Drives_construct: WBCnstr00030426
    Construct_product: WBCnstr00030426
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_adult_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050225:flp-6(RNAi)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061527:mrpl-54-lbp-4
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_4
      WBPaper00025032:cluster_20
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027342:alpha-Synuclein(WT)_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_H
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00048624:hlh-25(ok1710)_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00049538:atfs-1(et18)_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_6
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:intrinsic
    Interaction (46)
  Map_info: Map: IV Position: 5.51448
    Positive: Positive_clone: T12G3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00047123
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene