WormBase Tree Display for Gene: WBGene00011097

WBGene00011097 SMap: S_parent: Sequence: R07B7
  Identity: Version: 2
    Name: CGC_name: nhr-206 Person_evidence: WBPerson600
      Sequence_name: R07B7.13
      Molecular_name: R07B7.13a
        R07B7.13a.1
        CE06275
        R07B7.13b
        CE48399
        R07B7.13b.1
      Other_name: CELE_R07B7.13 Accession_evidence: NDB BX284605
      Public_name: nhr-206
    DB_info: Database: AceView gene 5M573
        WormQTL gene WBGene00011097
        WormFlux gene WBGene00011097
        NDB locus_tag CELE_R07B7.13
        Panther gene CAEEL|WormBase=WBGene00011097|UniProtKB=Q21803
          family PTHR24083
        NCBI gene 187660
        RefSeq protein NM_001307750.3
            NM_073632.6
        TrEMBL UniProtAcc Q21803
            N1NTC6
        UniProt_GCRP UniProtAcc Q21803
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-206
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (31)
    Strain: WBStrain00036547
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00150277 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00052425 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00222339 Brugia malayi From_analysis: WormBase-Compara
      WBGene00224250 Brugia malayi From_analysis: WormBase-Compara
      WBGene00224690 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1793 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g21020 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12063 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g19531 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g19000 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g865 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g867 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26125 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g26126 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g26280 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g26281 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13900 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g8588 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5953 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17311 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20381 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g21682 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9225 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00188.g6590 Caenorhabditis angaria From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10360 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00567.g12974 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_018184 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g19451 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g23149 Panagrellus redivivus From_analysis: WormBase-Compara
      chrV_pilon.g15922 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237444 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00239244 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00241769 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00244924 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00267740 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288423 Trichuris muris From_analysis: WormBase-Compara
      WBGene00292803 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301850 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301886 Trichuris muris From_analysis: WormBase-Compara
    Paralog (42)
    Structured_description: Automated_description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in response to starvation. Predicted to be located in nucleus. Expressed in several structures, including anal sphincter muscle; hyp12; rectal gland cell; tail hypodermis; and vulva. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B7.13a
      R07B7.13b
    Corresponding_transcript: R07B7.13a.1
      R07B7.13b.1
    Associated_feature: WBsf647327
      WBsf661854
      WBsf978838
      WBsf232596
    Transcription_factor: WBTranscriptionFactor000906
  Experimental_info: RNAi_result: WBRNAi00110166 Inferred_automatically: RNAi_primary
      WBRNAi00070102 Inferred_automatically: RNAi_primary
      WBRNAi00110159 Inferred_automatically: RNAi_primary
      WBRNAi00051430 Inferred_automatically: RNAi_primary
      WBRNAi00051431 Inferred_automatically: RNAi_primary
      WBRNAi00110174 Inferred_automatically: RNAi_primary
      WBRNAi00110152 Inferred_automatically: RNAi_primary
      WBRNAi00110172 Inferred_automatically: RNAi_primary
      WBRNAi00017516 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7633
      Expr9030
      Expr9039
      Expr1019675
      Expr1034873
      Expr1155119
      Expr2014109
      Expr2032348
    Drives_construct: WBCnstr00012778
      WBCnstr00013684
      WBCnstr00030935
    Construct_product: WBCnstr00030935
    Microarray_results (21)
    Expression_cluster: WBPaper00031486:daf-16_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00042194:Tryptophan_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044030:nhr-8(hd117)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046338:intestine_unique
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048690:hermaphrodite-Z1-Z4_enriched
      WBPaper00048690:male-Z1-Z4-daughter_enriched
      WBPaper00048690:male-Z1-Z4_enriched
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:HeatShock_downregulated_hsf-1(+)
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051404:alg-5(ram2)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055226:ADR-2_target_adr-1(tm668)
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057068:Cadmium_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061340:K_Kprime
      WBPaper00061340:mc1
      WBPaper00061340:mc2
      WBPaper00061340:Parent_of_g1P_I3
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061340:Pharyngeal_marginal_cell
      WBPaper00061340:pm1_pm2
      WBPaper00061340:pm3_pm4_pm5
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064788:ketamine_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065841:5_0
      WBPaper00065841:5_1
      WBPaper00065841:24_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00029437:dcr-1_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:StarveUp3
      WBPaper00034739:N2moreDR1350
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:daf-16_fasting_upregulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    SAGE_tag: SAGE:tggctactaa Strand: Antisense
      SAGE:gattattcat Strand: Sense
        Unambiguously_mapped
    Interaction: WBInteraction000192780
      WBInteraction000226599
      WBInteraction000231492
      WBInteraction000272849
      WBInteraction000360272
      WBInteraction000363413
      WBInteraction000383455
      WBInteraction000386921
      WBInteraction000426767
      WBInteraction000444792
  Map_info: Map: V Position: 3.62984 Error: 0.001344
    Positive: Positive_clone: R07B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034540
    WBPaper00036257
    WBPaper00039677
    WBPaper00060760
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene