WormBase Tree Display for Gene: WBGene00011883

WBGene00011883 SMap: S_parent: Sequence: T21B10
  Identity: Version: 2
    Name: CGC_name: mrpl-50 Person_evidence: WBPerson261
      Sequence_name: T21B10.1
      Molecular_name: T21B10.1
        T21B10.1.1
        CE03683
      Other_name: CELE_T21B10.1 Accession_evidence: NDB BX284602
      Public_name: mrpl-50
    DB_info: Database: AceView gene 2J221
        WormQTL gene WBGene00011883
        WormFlux gene WBGene00011883
        NDB locus_tag CELE_T21B10.1
        Panther gene CAEEL|WormBase=WBGene00011883|UniProtKB=Q22623
          family PTHR31542
        NCBI gene 174422
        RefSeq protein NM_063498.6
        TREEFAM TREEFAM_ID TF105895
        TrEMBL UniProtAcc Q22623
        UniProt_GCRP UniProtAcc Q22623
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-50
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (17)
    Strain: WBStrain00032423
    RNASeq_FPKM (74)
    GO_annotation: 00075870
      00075871
      00075872
      00075873
      00075874
      00119096
    Contained_in_operon: CEOP2396
    Ortholog (35)
    Structured_description: Automated_description: Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL50 (mitochondrial ribosomal protein L50). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T21B10.1
    Corresponding_transcript: T21B10.1.1
    Other_sequence (41)
    Associated_feature: WBsf221832
  Experimental_info: RNAi_result (8)
    Expr_pattern: Expr1016404
      Expr1035235
      Expr1157235
      Expr2013727
      Expr2031962
    Drives_construct: WBCnstr00030313
    Construct_product: WBCnstr00030313
    Microarray_results: SMD_T21B10.1
      184090_at
      A_12_P114964
      Aff_T21B10.1
      GPL13394_WBGene00011883
      GPL13914_T21B10.1
      GPL14144_T21B10.1_445-504_0.901_11_A
      GPL14144_T21B10.1_553-612_0.953_1_B
      GPL14144_T21B10.1_744-803_0.948_2_C
      GPL19516_CGZ0035783
      GPL21109_T21B10.1
      GPL3518_CE03683
      GPL8304_CE_WBGene00011883_A
      GPL8304_CE_WBGene00011883_B
      GPL8304_CE_WBGene00011883_C
      GPL8673_T21B10_1P00101
      GPL8673_T21B10_1P00205
      GPL8673_T21B10_1P00629
      GPL9450_T21B10.1
      cea2.c.14337
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046691:AB_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052987:UV_downregulated_xpc-1;csb-1
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:mrpl-54-lbp-4
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:let-7_miRNA_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064750:10mg-nanoplastics_upregulated_protein
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      WBPaper00006465:II_ethanol_late_induction
      WBPaper00025032:cluster_46
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00027342:alpha-Synuclein(WT)_upregulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:cluster_5
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
    Interaction (11)
  Map_info: Map: II Position: 0.931576 Error: 0.000944
    Positive: Positive_clone: T21B10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029254
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene