WormBase Tree Display for Gene: WBGene00017247

WBGene00017247 SMap: S_parent: Sequence: F08D12
  Identity: Version: 2
    Name: Sequence_name: F08D12.3
      Molecular_name: F08D12.3
        F08D12.3.1
        CE09236
      Other_name: CELE_F08D12.3 Accession_evidence: NDB BX284602
      Public_name: F08D12.3
    DB_info: Database: AceView gene 2D69C
            2D69
        WormQTL gene WBGene00017247
        WormFlux gene WBGene00017247
        NDB locus_tag CELE_F08D12.3
        Panther gene CAEEL|WormBase=WBGene00017247|UniProtKB=P91237
          family PTHR34150
        NCBI gene 3565148
        RefSeq protein NM_061962.6
        TrEMBL UniProtAcc P91237
        UniProt_GCRP UniProtAcc P91237
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 30 Jun 2014 13:23:05 WBPerson1983 Event: Split_into: WBGene00043239
      Split_into: WBGene00043239
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (34)
    RNASeq_FPKM (74)
    Ortholog: WBGene00092167 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00105988 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      FL83_17189 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_21154 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006780 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_006784 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrII_pilon.g3784 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00079338 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog: WBGene00009604 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00013090 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00017246 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00022445 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00022440 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00022439 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in ABalaaaala; ABalaapaaa; pharyngeal gland cell; and pharyngeal neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twelve chemicals including rotenone; D-glucose; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: CC domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F08D12.3
    Corresponding_CDS_history: F08D12.3b:wp244
    Corresponding_transcript: F08D12.3.1
    Associated_feature (10)
  Experimental_info: RNAi_result: WBRNAi00043991 Inferred_automatically: RNAi_primary
      WBRNAi00012881 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028836
      Expr1147963
      Expr2002287
      Expr2020506
    Drives_construct: WBCnstr00027457
    Construct_product: WBCnstr00027457
    Microarray_results (23)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037682:sma-2_downregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_upregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049217:TCER-1_upregulated
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:nerve-ring_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056617:adr-1_upregulated_L4_transcript
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_OP50
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059605:simr-1(cmp36)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059895:wounding_upregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061007:X.citri_downregulated
      WBPaper00061340:AIN_parent
      WBPaper00061340:g1A
      WBPaper00061340:g2
      WBPaper00061340:Pharyngeal_neuron
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:M04G7.1-R06F6.7
      WBPaper00061527:srj-21-srh-32
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00061753:csr-1(tor159)_upregulated_20C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065149:lin-52(n771)_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:99
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065841:78_0
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066118:cyclobutrifluram_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_17
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00034739:N2lessDR1350
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00039851:HK_C_albicans_vs_HK_OP50
      WBPaper00039851:Live_C_albicans_vs_HK_OP50
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_11d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00041906:I-3690_vs_OP50_10d
      WBPaper00041906:I-4317_vs_OP50_10d
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045437:Toxic-Se_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_downregulated
    Interaction: WBInteraction000175453
      WBInteraction000187873
      WBInteraction000189579
      WBInteraction000192436
      WBInteraction000192885
      WBInteraction000197489
      WBInteraction000214442
      WBInteraction000216976
      WBInteraction000218693
      WBInteraction000222397
      WBInteraction000224328
      WBInteraction000229742
      WBInteraction000241603
      WBInteraction000248399
      WBInteraction000259665
      WBInteraction000263383
      WBInteraction000280055
      WBInteraction000293135
      WBInteraction000298534
      WBInteraction000298545
      WBInteraction000302579
      WBInteraction000318055
      WBInteraction000331671
      WBInteraction000340140
      WBInteraction000350099
      WBInteraction000353808
      WBInteraction000354196
      WBInteraction000368438
      WBInteraction000369898
      WBInteraction000410725
      WBInteraction000411192
      WBInteraction000433460
      WBInteraction000437838
      WBInteraction000439596
      WBInteraction000459706
      WBInteraction000514883
  Map_info: Positive: Positive_clone: F08D12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -11.1465
  Method: Gene