WormBase Tree Display for Gene: WBGene00015747

WBGene00015747 SMap: S_parent: Sequence: C13G5
  Identity: Version: 1
    Name: Sequence_name: C13G5.2
      Molecular_name: C13G5.2
        C13G5.2.1
        CE29086
      Other_name: CELE_C13G5.2 Accession_evidence: NDB BX284603
      Public_name: C13G5.2
    DB_info: Database: AceView gene 3J706
        WormQTL gene WBGene00015747
        WormFlux gene WBGene00015747
        NDB locus_tag CELE_C13G5.2
        Panther gene CAEEL|WormBase=WBGene00015747|UniProtKB=P34327
          family PTHR21525
        NCBI gene 176208
        RefSeq protein NM_066496.5
        SwissProt UniProtAcc P34327
        TREEFAM TREEFAM_ID TF322639
        UniProt_GCRP UniProtAcc P34327
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (38)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3536
    Ortholog (23)
    Paralog: WBGene00015382 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00015526 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00022802 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in germ line; germline precursor cell; head neurons; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; manganese chloride; and Zidovudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C13G5.2
    Corresponding_transcript: C13G5.2.1
    Other_sequence: CR01500
      CR00853
      CRC05399_1
      CRC01469_1
    Associated_feature: WBsf651293
      WBsf667166
      WBsf667167
      WBsf993413
      WBsf993414
      WBsf227154
  Experimental_info: RNAi_result: WBRNAi00010701 Inferred_automatically: RNAi_primary
      WBRNAi00028853 Inferred_automatically: RNAi_primary
      WBRNAi00005506 Inferred_automatically: RNAi_primary
      WBRNAi00005879 Inferred_automatically: RNAi_primary
      WBRNAi00040459 Inferred_automatically: RNAi_primary
      WBRNAi00040458 Inferred_automatically: RNAi_primary
      WBRNAi00085092 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016552
      Expr1036739
      Expr1144523
      Expr2000752
      Expr2018971
    Drives_construct: WBCnstr00028599
    Construct_product: WBCnstr00028599
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_12h
      WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Oogenic
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057154:HeatShock_upregulated_miRNA-target
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:AIZ
      WBPaper00061340:AVJ
      WBPaper00061340:RID
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00061651:PHso_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064502:spe-44(fx110)_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025032:cluster_1
      WBPaper00025032:cluster_4
      WBPaper00025099:NI_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_B
      WBPaper00026980:intestine_enriched
      WBPaper00027342:alpha-Synuclein(WT)_upregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034739:N2moreDR1350
      WBPaper00034739:RIL17moreRIL14
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_F
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA300_down
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000032458
      WBInteraction000137931
      WBInteraction000142457
      WBInteraction000142668
      WBInteraction000142937
      WBInteraction000147845
      WBInteraction000149912
      WBInteraction000174831
      WBInteraction000181505
      WBInteraction000198310
      WBInteraction000207437
      WBInteraction000226545
      WBInteraction000227152
      WBInteraction000263090
      WBInteraction000278167
      WBInteraction000289861
      WBInteraction000294222
      WBInteraction000305575
      WBInteraction000306767
      WBInteraction000308379
      WBInteraction000312489
      WBInteraction000312935
      WBInteraction000318903
      WBInteraction000320335
      WBInteraction000321238
      WBInteraction000326354
      WBInteraction000332759
      WBInteraction000341823
      WBInteraction000347262
      WBInteraction000347293
      WBInteraction000349915
      WBInteraction000361020
      WBInteraction000361085
      WBInteraction000361381
      WBInteraction000365100
      WBInteraction000365593
      WBInteraction000378427
      WBInteraction000378846
      WBInteraction000383741
      WBInteraction000384008
      WBInteraction000408549
      WBInteraction000415406
      WBInteraction000418265
      WBInteraction000419215
      WBInteraction000419537
      WBInteraction000423486
      WBInteraction000427107
      WBInteraction000427478
      WBInteraction000435076
      WBInteraction000440096
      WBInteraction000441050
      WBInteraction000445518
      WBInteraction000446772
      WBInteraction000447765
      WBInteraction000448282
      WBInteraction000451014
      WBInteraction000451600
      WBInteraction000453845
      WBInteraction000455965
      WBInteraction000458462
      WBInteraction000547255
  Map_info: Positive: Positive_clone: C13G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -0.21995
  Method: Gene