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WormBase Tree Display for Gene: WBGene00007403

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Name Class

WBGene00007403SMapS_parentSequenceC07A9
IdentityVersion2
NameCGC_nameset-3Person_evidenceWBPerson1730
WBPerson268
WBPerson632
Sequence_nameC07A9.7
Molecular_nameC07A9.7a
C07A9.7a.1
CE00498
C07A9.7b
CE31769
C07A9.7b.1
Other_nameCELE_C07A9.7Accession_evidenceNDBBX284603
Public_nameset-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 May 2007 10:33:07WBPerson2970Name_changeCGC_nameset-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
Allele (38)
StrainWBStrain00036744
RNASeq_FPKM (74)
GO_annotation00041589
00041590
00041591
Contained_in_operonCEOP3612
Ortholog (30)
ParalogWBGene00009370Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011068Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022499Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044070Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionset-3 encodes, by alternative splicing, two alternative isoforms of a SET domain-containing protein; SET-3 is orthologous to human SMYD4; neither set-3(n4948) nor set-3(RNAi) have any obvious phenotypes.Paper_evidenceWBPaper00030864
Curator_confirmedWBPerson567
Date_last_updated11 Oct 2007 00:00:00
Automated_descriptionPredicted to enable methyltransferase activity. Predicted to be involved in methylation. Expressed in AB; Psub1; hypodermis; and intestine. Is an ortholog of human SMYD4 (SET and MYND domain containing 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC07A9.7a
C07A9.7b
Corresponding_CDS_historyC07A9.7:wp85
Corresponding_transcriptC07A9.7a.1
C07A9.7b.1
Other_sequenceCBC14341_1
CBC09680_1
Associated_featureWBsf1015652
WBsf1015653
WBsf227348
WBsf227349
WBsf227350
WBsf227351
Experimental_infoRNAi_resultWBRNAi00006400Inferred_automaticallyRNAi_primary
WBRNAi00113445Inferred_automaticallyRNAi_primary
WBRNAi00091506Inferred_automaticallyRNAi_primary
WBRNAi00039980Inferred_automaticallyRNAi_primary
WBRNAi00072917Inferred_automaticallyRNAi_primary
WBRNAi00010368Inferred_automaticallyRNAi_primary
WBRNAi00028620Inferred_automaticallyRNAi_primary
Expr_patternExpr14358
Expr14405
Expr1026361
Expr1033188
Expr1144058
Expr2015779
Expr2034012
Drives_constructWBCnstr00033767
Construct_productWBCnstr00033767
Microarray_results (25)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035269:cde-1_regulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_embryo_enriched
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00040209:B.thuringiensis_upregulated_N2
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00048988:neuron_expressed
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056284:ints-11(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058958:100mGy-irradiation-72h_downregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061340:M1_parent
WBPaper00061340:Neuroblast_ADF_AWB
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_AIZ_FLP_RMG
WBPaper00061340:Neuroblast_ASG_AWA
WBPaper00061340:Neuroblast_M2_M3
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061340:Parent_of_exc_gland_AVK
WBPaper00061340:URA_parent
WBPaper00061527:pch-2-B0393.3
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062590:Aging_downregulated_body-wall-muscle
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064505:tamoxifen_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00025032:cluster_28
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_F
[cgc6390]:intrinsic
InteractionWBInteraction000151572
WBInteraction000179712
WBInteraction000185016
WBInteraction000191549
WBInteraction000194885
WBInteraction000207457
WBInteraction000212123
WBInteraction000213272
WBInteraction000215746
WBInteraction000216246
WBInteraction000216248
WBInteraction000217154
WBInteraction000221836
WBInteraction000224750
WBInteraction000224801
WBInteraction000236344
WBInteraction000239166
WBInteraction000239430
WBInteraction000256271
WBInteraction000264187
WBInteraction000266218
WBInteraction000268100
WBInteraction000275796
WBInteraction000277550
WBInteraction000278045
WBInteraction000286574
WBInteraction000287613
WBInteraction000287772
WBInteraction000289117
WBInteraction000289271
WBInteraction000289801
WBInteraction000293492
WBInteraction000293591
WBInteraction000295417
WBInteraction000297264
WBInteraction000298265
WBInteraction000299504
WBInteraction000307741
WBInteraction000308685
WBInteraction000309914
WBInteraction000314327
WBInteraction000314644
WBInteraction000316422
WBInteraction000325769
WBInteraction000326833
WBInteraction000329163
WBInteraction000329881
WBInteraction000330987
WBInteraction000331579
WBInteraction000334666
WBInteraction000336536
WBInteraction000337486
WBInteraction000338122
WBInteraction000338454
WBInteraction000342192
WBInteraction000346488
WBInteraction000347606
WBInteraction000350084
WBInteraction000355116
WBInteraction000357973
WBInteraction000358393
WBInteraction000366475
WBInteraction000367126
WBInteraction000370115
WBInteraction000372257
WBInteraction000373091
WBInteraction000379765
WBInteraction000382414
WBInteraction000382549
WBInteraction000389211
WBInteraction000390740
WBInteraction000391291
WBInteraction000392890
WBInteraction000396380
WBInteraction000400618
WBInteraction000406439
WBInteraction000406642
WBInteraction000407088
WBInteraction000416205
WBInteraction000418209
WBInteraction000419093
WBInteraction000425705
WBInteraction000429992
WBInteraction000437368
WBInteraction000437492
WBInteraction000438013
WBInteraction000440302
WBInteraction000441257
WBInteraction000446342
WBInteraction000455494
WBInteraction000547199
WBInteraction000579414
Map_infoMapIIIPosition0.885193Error0.008764
PositivePositive_cloneC07A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00030864
WBPaper00036383
WBPaper00038372
WBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene