WormBase Tree Display for Gene: WBGene00014109

WBGene00014109 SMap: S_parent: Sequence: ZK856
  Identity: Version: 2
    Name: CGC_name: chpf-1 Person_evidence: WBPerson2233
      Sequence_name: ZK856.8
      Molecular_name: ZK856.8
        ZK856.8.1
        CE06665
      Other_name: CELE_ZK856.8 Accession_evidence: NDB BX284605
      Public_name: chpf-1
    DB_info: Database: AceView gene 5K682
        WormQTL gene WBGene00014109
        WormFlux gene WBGene00014109
        NDB locus_tag CELE_ZK856.8
        Panther gene CAEEL|WormBase=WBGene00014109|UniProtKB=Q23643
          family PTHR46002
        NCBI gene 179415
        RefSeq protein NM_001392590.1
        TREEFAM TREEFAM_ID TF354284
        TrEMBL UniProtAcc Q23643
        UniProt_GCRP UniProtAcc Q23643
        OMIM gene 606988
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 14 Apr 2015 09:52:28 WBPerson2970 Name_change: CGC_name: chpf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: chpf
    Allele (20)
    Strain: WBStrain00003461
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP5248
    Ortholog (40)
    Paralog: WBGene00003941 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019108 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00000554 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009260 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020192 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Predicted to be located in plasma membrane. Expressed in head; intestine; tail; and in male. Human ortholog(s) of this gene implicated in spastic ataxia. Is an ortholog of human CHP1 (calcineurin like EF-hand protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050952 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17433)
  Molecular_info: Corresponding_CDS: ZK856.8
    Corresponding_transcript: ZK856.8.1
    Other_sequence: Dviv_isotig04336
      TDC00160_1
      FD514451.1
      PPC17338_1
      CJC01383_1
      Dviv_isotig04322
      Dviv_isotig04335
      GR13188
      PPC03401_1
      SSC00389_1
      ACC18233_1
      MPC01293_1
      HGC00106_1
      Dviv_isotig04326
      GR13669
      MHC02998_1
      RS08228
      AYC01320_1
      GRC02890_1
      PP02525
      Dviv_isotig04321
      RS06863
      Dviv_isotig04337
      HG03254
      ASC02626_1
      ACC12994_1
      RSC02221_1
      Dviv_isotig04331
      Dviv_isotig04323
      Oden_isotig17293
      AA683449.1
      MJC03129_1
      EX913545.1
      CRC01676_1
      MJ04000
      MC00569
      PSC00768_1
      EY459763.1
      HG11192
      HBC00194_1
      AS12748
      ACC00114_1
      BXC01812_1
      MI02880
      JI165618.1
      Dviv_isotig04324
      CSC00399_1
      NB06940
      XI03369
      PPC01659_1
      GW410349.1
      NBC01754_1
      EY469505.1
      AS02874
      OVC00267_1
      BUC01521_1
      Dviv_isotig04320
      HC07112
      EX910424.1
      HCC01988_1
      CR09989
      MC05316
      Tcol_isotig04646
      Dviv_isotig04334
      ES744636.1
      Hbac_isotig02895
      MP01701
      MCC05123_1
      HC00666
      ES741668.1
      Dviv_isotig04329
      MI03882
      CN477421.1
      ES739745.1
      Dviv_isotig04330
      Acan_isotig09811
      Dviv_isotig04333
      MI00867
      JI216304.1
      AE02293
      ES744066.1
      PVC02178_1
      Dviv_isotig04327
      Dviv_isotig04328
      EX561422.1
      Dviv_isotig04325
      AS09074
      Acan_isotig21659
      CB043572.1
      Oden_isotig17294
      ES412676.1
      Name_isotig00945
      CBC00350_1
      GRC02323_1
      ES413866.1
      Dviv_isotig04332
      MH02419
      HC01398
      BE217608.1
      MI04348
      EL890001.1
      XIC02933_1
      ASC06341_1
      EX560373.1
      SS01396
      EX537201.1
      MIC00956_1
      MI02163
      OOC03505_1
    Associated_feature: WBsf652968
      WBsf652969
      WBsf234342
      WBsf234343
  Experimental_info: RNAi_result: WBRNAi00033583 Inferred_automatically: RNAi_primary
      WBRNAi00022203 Inferred_automatically: RNAi_primary
      WBRNAi00080519 Inferred_automatically: RNAi_primary
      WBRNAi00027568 Inferred_automatically: RNAi_primary
      WBRNAi00027110 Inferred_automatically: RNAi_primary
      WBRNAi00059779 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7265
      Expr12596
      Expr12597
      Expr1012295
      Expr1036319
      Expr1163208
      Expr2009997
      Expr2028238
    Drives_construct: WBCnstr00003922
      WBCnstr00022362
      WBCnstr00022363
      WBCnstr00029301
    Construct_product: WBCnstr00029301
    Microarray_results (23)
    Expression_cluster (99)
    Interaction (28)
  Map_info: Positive: Positive_clone: ZK856 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.32882
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Method: Gene