WormBase Tree Display for Gene: WBGene00006750
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WBGene00006750 | SMap | S_parent | Sequence | T10A3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | unc-10 | Person_evidence | WBPerson261 | |||||
Sequence_name | T10A3.1 | ||||||||
Molecular_name (18) | |||||||||
Other_name | rim-1 | ||||||||
Rim | Paper_evidence | WBPaper00013595 | |||||||
CELE_T10A3.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | unc-10 | ||||||||
DB_info | Database | AceView | gene | XH892 | |||||
WormQTL | gene | WBGene00006750 | |||||||
WormFlux | gene | WBGene00006750 | |||||||
NDB | locus_tag | CELE_T10A3.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006750|UniProtKB=Q22366 | |||||||
family | PTHR12157 | ||||||||
NCBI | gene | 180990 | |||||||
RefSeq | protein | NM_001375067.2 | |||||||
NM_001375065.2 | |||||||||
NM_001029730.6 | |||||||||
NM_001375066.2 | |||||||||
NM_171720.7 | |||||||||
NM_001375064.2 | |||||||||
SwissProt | UniProtAcc | Q22366 | |||||||
TREEFAM | TREEFAM_ID | TF321703 | |||||||
TrEMBL | UniProtAcc | A0A5E4LXW2 | |||||||
A0A5E4LWH4 | |||||||||
A0A5E4M2M0 | |||||||||
A0A5E4LYK9 | |||||||||
UniProt_GCRP | UniProtAcc | Q22366 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00142961 | ||||||||
Allele (153) | |||||||||
Legacy_information | e102 : weak coiler tends to back loopy movement in reverse; fairly active slightly small and thin. ES3 ME2. NA2 (e126). | ||||||||
[C.elegansII] e102 : weak coiler, tends to back, loopy movement in reverse; fairly active; slightly small and thin; Ric. ES3 ME2. OA1: e126. [Brenner 1974; Nguyen et al. 1995] | |||||||||
[Nonet M] unc-10(e102) was phenotypically rescued by both cosmid C34H12 and a 16 kb BamHI/KpnI subclone of this cosmid that contains effectively only the rim-1 gene. The rim-1 gene (rim for Rab Interacting Molecule) is the combined genefinder products T10A3.1 and K03A1.3 (with several mistakes in the prediction by genefinder). Furthermore, unc-10(md330) and unc-10(md1117) both contain deletions of the vast majority of the rim-1 gene. Specifically, md1117 deleted 8.6 kb that extends from approximately 500 bp 5' of the atg to 200 bp 3' of the TAA of the rim-1 gene product. | |||||||||
[Nonet M] Encodes Rab-3 interacting protein. | |||||||||
Strain | WBStrain00002752 | ||||||||
WBStrain00027194 | |||||||||
WBStrain00029061 | |||||||||
WBStrain00004100 | |||||||||
WBStrain00005485 | |||||||||
WBStrain00005508 | |||||||||
WBStrain00005509 | |||||||||
WBStrain00051853 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00004030 | ||||||||
00004031 | |||||||||
00004032 | |||||||||
00075066 | |||||||||
00075067 | |||||||||
00075068 | |||||||||
00075069 | |||||||||
00075070 | |||||||||
00075071 | |||||||||
00075072 | |||||||||
00075073 | |||||||||
00075074 | |||||||||
00075075 | |||||||||
00075076 | |||||||||
00075077 | |||||||||
00075078 | |||||||||
00075079 | |||||||||
00075080 | |||||||||
00075081 | |||||||||
00075082 | |||||||||
00075083 | |||||||||
00075084 | |||||||||
00075085 | |||||||||
00075086 | |||||||||
00075087 | |||||||||
00075088 | |||||||||
00075089 | |||||||||
00075090 | |||||||||
00075091 | |||||||||
00114740 | |||||||||
00114741 | |||||||||
00114742 | |||||||||
Ortholog (51) | |||||||||
Structured_description | Concise_description | unc-10 encodes a protein with zinc-finger, Q/N-rich, PDZ, and C2 domains that is homologous to vertebrate Rim1, a presynaptic protein which binds, and effects the activity of, synaptic vesicle-associated GTP-Rab3; UNC-10 is required for normal locomotion and synaptic transmission, and localizes to a subdomain of presynaptic termini, where it probably acts to regulate the priming step of presynaptic vesicle fusion by promoting conformational changes in syntaxin. | Paper_evidence | WBPaper00002487 | |||||
WBPaper00004891 | |||||||||
WBPaper00005068 | |||||||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables small GTPase binding activity. Involved in several processes, including chemical synaptic transmission; defecation; and positive regulation of cholinergic synaptic transmission. Located in axon and presynaptic active zone. Expressed in dorsal nerve cord; nerve ring; nervous system; uv1; and ventral nerve cord. Is an ortholog of human RIMS1 (regulating synaptic membrane exocytosis 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T10A3.1a | |||||||
T10A3.1b | |||||||||
T10A3.1c | |||||||||
T10A3.1d | |||||||||
T10A3.1e | |||||||||
T10A3.1f | |||||||||
Corresponding_transcript | T10A3.1a.1 | ||||||||
T10A3.1b.1 | |||||||||
T10A3.1c.1 | |||||||||
T10A3.1d.1 | |||||||||
T10A3.1e.1 | |||||||||
T10A3.1f.1 | |||||||||
Other_sequence (30) | |||||||||
Associated_feature (22) | |||||||||
Experimental_info | RNAi_result (19) | ||||||||
Expr_pattern | Chronogram1591 | ||||||||
Expr2418 | |||||||||
Expr14780 | |||||||||
Expr15235 | |||||||||
Expr15236 | |||||||||
Expr1017493 | |||||||||
Expr1032824 | |||||||||
Expr1156587 | |||||||||
Expr2017837 | |||||||||
Expr2035973 | |||||||||
Drives_construct | WBCnstr00003280 | ||||||||
WBCnstr00034173 | |||||||||
Construct_product (11) | |||||||||
Antibody | WBAntibody00000412 | ||||||||
WBAntibody00000866 | |||||||||
WBAntibody00001456 | |||||||||
WBAntibody00001656 | |||||||||
WBAntibody00001729 | |||||||||
WBAntibody00002171 | |||||||||
Microarray_results (30) | |||||||||
Expression_cluster (208) | |||||||||
Interaction | WBInteraction000035668 | ||||||||
WBInteraction000038235 | |||||||||
WBInteraction000049017 | |||||||||
WBInteraction000112791 | |||||||||
WBInteraction000113770 | |||||||||
WBInteraction000114671 | |||||||||
WBInteraction000126291 | |||||||||
WBInteraction000126343 | |||||||||
WBInteraction000126345 | |||||||||
WBInteraction000126405 | |||||||||
WBInteraction000126559 | |||||||||
WBInteraction000126635 | |||||||||
WBInteraction000134619 | |||||||||
WBInteraction000160349 | |||||||||
WBInteraction000166757 | |||||||||
WBInteraction000166866 | |||||||||
WBInteraction000166953 | |||||||||
WBInteraction000167492 | |||||||||
WBInteraction000173992 | |||||||||
WBInteraction000175570 | |||||||||
WBInteraction000178045 | |||||||||
WBInteraction000178046 | |||||||||
WBInteraction000178047 | |||||||||
WBInteraction000188216 | |||||||||
WBInteraction000203613 | |||||||||
WBInteraction000204742 | |||||||||
WBInteraction000204743 | |||||||||
WBInteraction000204744 | |||||||||
WBInteraction000229511 | |||||||||
WBInteraction000229512 | |||||||||
WBInteraction000229513 | |||||||||
WBInteraction000229514 | |||||||||
WBInteraction000229515 | |||||||||
WBInteraction000229516 | |||||||||
WBInteraction000232224 | |||||||||
WBInteraction000250100 | |||||||||
WBInteraction000277217 | |||||||||
WBInteraction000294878 | |||||||||
WBInteraction000299279 | |||||||||
WBInteraction000306028 | |||||||||
WBInteraction000322458 | |||||||||
WBInteraction000341645 | |||||||||
WBInteraction000341646 | |||||||||
WBInteraction000354905 | |||||||||
WBInteraction000359943 | |||||||||
WBInteraction000359944 | |||||||||
WBInteraction000361252 | |||||||||
WBInteraction000380125 | |||||||||
WBInteraction000399489 | |||||||||
WBInteraction000399490 | |||||||||
WBInteraction000410776 | |||||||||
WBInteraction000434105 | |||||||||
WBInteraction000447522 | |||||||||
WBInteraction000469049 | |||||||||
WBInteraction000471265 | |||||||||
WBInteraction000471266 | |||||||||
WBInteraction000501292 | |||||||||
WBInteraction000501720 | |||||||||
WBInteraction000502148 | |||||||||
WBInteraction000502149 | |||||||||
WBInteraction000502961 | |||||||||
WBInteraction000502962 | |||||||||
WBInteraction000520028 | |||||||||
WBInteraction000540982 | |||||||||
WBInteraction000543488 | |||||||||
WBInteraction000544486 | |||||||||
WBInteraction000544487 | |||||||||
WBInteraction000544604 | |||||||||
WBInteraction000544708 | |||||||||
WBInteraction000544709 | |||||||||
WBInteraction000555755 | |||||||||
WBInteraction000556685 | |||||||||
WBInteraction000556819 | |||||||||
WBInteraction000558409 | |||||||||
WBInteraction000560298 | |||||||||
WBInteraction000560299 | |||||||||
WBInteraction000566964 | |||||||||
WBInteraction000570720 | |||||||||
WBInteraction000574266 | |||||||||
WBInteraction000578488 | |||||||||
WBInteraction000583717 | |||||||||
WBInteraction000584115 | |||||||||
Map_info | Map | X | Position | -1.7816 | Error | 0.001118 | |||
Well_ordered | |||||||||
Positive | Positive_clone | C34H12 | |||||||
T10A3 | Person_evidence | WBPerson451 | |||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | 2_point | 147 | |||||||
182 | |||||||||
3912 | |||||||||
3913 | |||||||||
6198 | |||||||||
Multi_point (23) | |||||||||
Pos_neg_data (13) | |||||||||
Reference (108) | |||||||||
Remark | Sequence connection from [Koushika SP, Nonet M] | ||||||||
Other name from JA Hodgkin, 09/02/2002 | |||||||||
unc-10 is the same as rim-1 and therefore rim-1 was merged into unc-10 based on advice from JAH | |||||||||
Method | Gene |