WormBase Tree Display for Gene: WBGene00003015

WBGene00003015 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 1
    Name: CGC_name: lin-29 Person_evidence: WBPerson261
      Sequence_name: W03C9.4
      Molecular_name (36)
      Other_name: egl-29
        CELE_W03C9.4 Accession_evidence: NDB BX284602
      Public_name: lin-29
    DB_info: Database: WormQTL gene WBGene00003015
        WormFlux gene WBGene00003015
        NDB locus_tag CELE_W03C9.4
        Panther gene CAEEL|WormBase=WBGene00003015|UniProtKB=G5EGB2
          family PTHR24393
        NCBI gene 174830
        RefSeq protein (12)
        SwissProt UniProtAcc G5EGB2
        TREEFAM TREEFAM_ID TF321334
        TrEMBL UniProtAcc A0A8S4QBS8
            A0A8S4QBR1
            A0A8S4QD26
            A0A8S4QD13
            A0A8S4QF65
            A0A8S4QF14
            A0A8S4QAV3
            A0A8S4QGF3
            A0A8S4QB12
            A0A8S4Q999
        UniProt_GCRP UniProtAcc G5EGB2
            A0A8S4QB12
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (12)
  Molecular_info: Corresponding_CDS: W03C9.4a
      W03C9.4b
      W03C9.4c
      W03C9.4d
      W03C9.4e
      W03C9.4f
      W03C9.4g
      W03C9.4h
      W03C9.4i
      W03C9.4j
      W03C9.4k
      W03C9.4l
    Corresponding_CDS_history: W03C9.4:wp52
      W03C9.4a:wp282
    Corresponding_transcript (12)
    Other_sequence: L39212
      Oden_isotig27921
      ALC00386_1
      JI472285.1
      JI170177.1
      Oden_isotig24145
      Dviv_isotig08357
      BU585929.1
      Dviv_isotig08359
    Associated_feature (25)
    Transcription_factor: WBTranscriptionFactor000182
  Experimental_info: RNAi_result (54)
    Expr_pattern (21)
    Drives_construct: WBCnstr00004852
      WBCnstr00004853
      WBCnstr00007950
      WBCnstr00012842
      WBCnstr00019672
      WBCnstr00038161
    Construct_product: WBCnstr00004852
      WBCnstr00004853
      WBCnstr00007950
      WBCnstr00038160
      WBCnstr00041366
    Regulate_expr_cluster: WBPaper00059191:hsp-16.2p-LIN-29_downregulated
      WBPaper00059191:hsp-16.2p-LIN-29_upregulated
    Antibody: WBAntibody00000115
      WBAntibody00001235
    Microarray_results (26)
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048690:gonad-male-biased
      WBPaper00048690:male-Z1-Z4-daughter_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049626:UNC-75_target
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050717:let-7(n2853)_lin-41(xe11)_downregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:GABAergic-neuron_enriched
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00059191:hsp-16.2p-LIN-29_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059605:simr-1(cmp36)_downregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061340:Anterior_arcade_cell
      WBPaper00061340:Posterior_arcade_cell
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:col-128-cdh-10_9234
      WBPaper00062167:mbl-1(tm1563)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062335:sir-2.1(ok434)_downregulated_L3
      WBPaper00062440:crh-1(n3315)_upregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065841:7_4
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_8
      cgc4489_group_16
      WBPaper00025032:cluster_59
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_C
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc6390]:Cluster_B
    Interaction (186)
    WBProcess: WBbiopr:00000031
      WBbiopr:00000083
  Map_info: Map: II Position: 4.13905 Error: 0.002312
    Well_ordered
    Positive: Inside_rearr: mnDf87
      Positive_clone: W03C9 Inferred_automatically: From sequence, transcript, pseudogene data
        Y17G7
    Mapping_data: 2_point: 777
      Multi_point (12)
      Pos_neg_data (15)
  Reference (218)
  Remark: lin-29 and egl-29 allelic. letter from Paul Sternberg. [0103]
  Method: Gene