WormBase Tree Display for Gene: WBGene00012980

WBGene00012980 SMap: S_parent: Sequence: Y48B6A
  Identity: Version: 2
    Name: CGC_name: efhd-1 Paper_evidence: WBPaper00041587
      Sequence_name: Y48B6A.6
      Molecular_name: Y48B6A.6a
        Y48B6A.6a.1
        CE32970
        Y48B6A.6b
        CE41852
        Y48B6A.6c
        CE41853
        Y48B6A.6a.2
        Y48B6A.6b.1
        Y48B6A.6c.1
      Other_name: EFhd2 orthologue Paper_evidence: WBPaper00038072
        CELE_Y48B6A.6 Accession_evidence: NDB BX284602
      Public_name: efhd-1
    DB_info: Database: AceView gene 2O479
        WormQTL gene WBGene00012980
        WormFlux gene WBGene00012980
        NDB locus_tag CELE_Y48B6A.6
        Panther gene CAEEL|WormBase=WBGene00012980|UniProtKB=Q9U2A6
          family PTHR13025
        NCBI gene 175073
        RefSeq protein NM_064560.7
            NM_182166.7
            NM_001129185.5
        TREEFAM TREEFAM_ID TF320736
        TrEMBL UniProtAcc Q8I0Z7
            A8XMZ5
            Q9U2A6
        UniProt_GCRP UniProtAcc Q9U2A6
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: efhd
    Allele: WBVar00787336
      WBVar00787337
      WBVar02109926
      WBVar02109927
      WBVar00787338
      WBVar01499702
      WBVar00787339
      WBVar00787340
      WBVar01392945
      WBVar00787341
      WBVar00787342
      WBVar01937281
      WBVar00787343
      WBVar01937282
      WBVar00787344
      WBVar01950416
      WBVar01950417
      WBVar01937284
      WBVar00787345
      WBVar01950418
      WBVar01937286
      WBVar00787346
      WBVar01823210
      WBVar01950419
      WBVar00787347
      WBVar00787348
      WBVar01950420
      WBVar00787349
      WBVar01950421
      WBVar01562992
      WBVar01562993
      WBVar01950422
      WBVar00787350
      WBVar00787351
      WBVar01950423
      WBVar01562994
      WBVar01562995
      WBVar00787352
      WBVar01540151
      WBVar01950425
      WBVar01562996
      WBVar00787353
      WBVar00232029
      WBVar01540152
      WBVar01950426
      WBVar01540153
      WBVar00232030
      WBVar00787354
      WBVar01562997
      WBVar00787355
      WBVar00232031
      WBVar01562998
      WBVar01540154
      WBVar00232032
      WBVar00787356
      WBVar01540155
      WBVar01562999
      WBVar01540156
      WBVar01563000
      WBVar00787357
      WBVar00232034
      WBVar01563001
      WBVar00787358
      WBVar00232035
      WBVar01563002
      WBVar00787359
      WBVar00232038
      WBVar01400903
      WBVar01563003
      WBVar01498435
      WBVar01400905
      WBVar00232039
      WBVar00787360
      WBVar01563004
      WBVar01400907
      WBVar00787361
      WBVar00232040
      WBVar01400908
      WBVar01563005
      WBVar00787362
      WBVar02131137
      WBVar00787363
      WBVar01563006
      WBVar01563007
      WBVar02131138
      WBVar00787364
      WBVar02131139
      WBVar00787365
      WBVar01563008
      WBVar00787366
      WBVar00787367
      WBVar00787368
      WBVar00787369
      WBVar00787370
      WBVar00787371
      WBVar00787372
      WBVar01836794
      WBVar02095791
      WBVar00787373
      WBVar00787374
      WBVar02095792
      WBVar01547814
      WBVar02095793
      WBVar00787375
      WBVar01547815
      WBVar00787376
      WBVar00787377
      WBVar01547816
      WBVar00787378
      WBVar00787379
      WBVar00787380
      WBVar00787381
      WBVar00787382
      WBVar02068415
      WBVar00787383
      WBVar02068416
      WBVar00787384
      WBVar02068417
      WBVar00313005
      WBVar02151105
      WBVar00313006
      WBVar01265618
      WBVar00313007
      WBVar00313008
      WBVar02035987
      WBVar00313009
      WBVar00235100
      WBVar00313010
      WBVar00313011
      WBVar00313012
      WBVar01406912
      WBVar00556563
      WBVar01406914
      WBVar00556564
      WBVar00556565
      WBVar00556570
      WBVar00556573
      WBVar02111278
      WBVar02087723
      WBVar02096749
      WBVar02046758
      WBVar02018468
      WBVar00013318
      WBVar00013323
      WBVar00384585
      WBVar01395274
      WBVar00384586
      WBVar01395275
      WBVar00384587
      WBVar01395276
      WBVar00013328
      WBVar01395277
      WBVar00384588
      WBVar00384589
      WBVar01395279
      WBVar00384590
      WBVar01252586
      WBVar00013333
      WBVar01252587
      WBVar00384591
      WBVar01252592
      WBVar00384592
      WBVar02014532
      WBVar01252593
      WBVar00384593
      WBVar01252594
      WBVar00384594
      WBVar00013338
      WBVar00384595
      WBVar01252596
      WBVar00384596
      WBVar00013343
      WBVar00384597
      WBVar01252597
      WBVar01252600
      WBVar00384598
      WBVar01252602
      WBVar00384599
      WBVar00384600
      WBVar01895789
      WBVar00013348
      WBVar01252603
      WBVar00384601
      WBVar01895790
      WBVar01252607
      WBVar00384602
      WBVar01252609
      WBVar00013353
      WBVar01802115
      WBVar00384603
      WBVar01252610
      WBVar00384604
      WBVar01802116
      WBVar01252611
      WBVar01802117
      WBVar00384605
      WBVar01252613
      WBVar01802118
      WBVar00013358
      WBVar00384606
      WBVar01252615
      WBVar00384607
      WBVar01802119
      WBVar01802120
      WBVar00384608
      WBVar02086478
      WBVar01252616
      WBVar01802121
      WBVar00013363
      WBVar00384609
      WBVar02086479
      WBVar01252619
      WBVar01944133
      WBVar00384610
      WBVar01802122
      WBVar01944134
      WBVar01252621
      WBVar00384611
      WBVar01802123
      WBVar01944136
      WBVar00013368
      WBVar01802124
      WBVar01944137
      WBVar01802125
      WBVar02029631
      WBVar01802126
      WBVar02029632
      WBVar00013373
      WBVar02029633
      WBVar01319457
      WBVar00013378
      WBVar01319458
      WBVar01319461
      WBVar01319462
      WBVar01319463
      WBVar01414832
      WBVar01392867
      WBVar00013383
      WBVar01319465
      WBVar01767422
      WBVar01767423
      WBVar01414834
      WBVar01319466
      WBVar01414835
      WBVar01767424
      WBVar01319467
      WBVar01767425
      WBVar01414836
      WBVar01319468
      WBVar01606413
      WBVar01319470
      WBVar01767426
      WBVar01414837
      WBVar02075204
      WBVar01898600
      WBVar01767427
      WBVar01414838
      WBVar01414840
      WBVar01826837
      WBVar01319474
      WBVar01392878
      WBVar01319478
      WBVar01319479
      WBVar01319480
      WBVar01319481
      WBVar01319482
      WBVar01319483
      WBVar02007313
      WBVar01319486
      WBVar02040923
      WBVar01319487
      WBVar02040925
      WBVar01319491
      WBVar01319492
      WBVar02040928
      WBVar01319493
      WBVar02040929
      WBVar01319494
      WBVar02040930
      WBVar01392889
      WBVar01994462
      WBVar01319496
      WBVar02040932
      WBVar01319497
      WBVar01319498
      WBVar02108227
      WBVar01319499
      WBVar01319501
      WBVar01319503
      WBVar01319504
      WBVar01392900
      WBVar01319505
      WBVar01319507
      WBVar01319508
      WBVar01319509
      WBVar01319510
      WBVar02073934
      WBVar00106867
      WBVar00106868
      WBVar01319511
      WBVar01792371
      WBVar00106869
      WBVar01319513
      WBVar01319514
      WBVar00301835
      WBVar01319515
      WBVar01392911
      WBVar01498941
      WBVar02073197
      WBVar01961075
      WBVar00787318
      WBVar00787319
      WBVar01392922
      WBVar00787320
      WBVar02117271
      WBVar00787321
      WBVar00787322
      WBVar01577288
      WBVar00787323
      WBVar00787324
      WBVar01577289
      WBVar00787325
      WBVar01577290
      WBVar01383952
      WBVar00787326
      WBVar00787327
      WBVar01383962
      WBVar01383965
      WBVar00787328
      WBVar00787329
      WBVar01383971
      WBVar00787330
      WBVar01392934
      WBVar00787331
      WBVar00787332
      WBVar00787333
      WBVar00787334
      WBVar00787335
    Strain: WBStrain00001460
    RNASeq_FPKM (74)
    GO_annotation: 00005433
      00119935
    Ortholog (37)
    Structured_description: Concise_description: efhd-1 encodes the C. elegans ortholog of the mammalian EF hand domain-containing proteins EFHD1 and EFHD2; large-scale expression studies report that efhd-1 is expressed in the pharynx, the body wall muscle, and the nervous system. Paper_evidence: WBPaper00031006
            WBPaper00038072
            WBPaper00041587
          Curator_confirmed: WBPerson1843
          Date_last_updated: 24 Nov 2014 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Is an ortholog of human EFHD1 (EF-hand domain family member D1). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48B6A.6a
      Y48B6A.6b
      Y48B6A.6c
    Corresponding_CDS_history: Y48B6A.6:wp92
      Y48B6A.6b:wp184
    Corresponding_transcript: Y48B6A.6a.1
      Y48B6A.6a.2
      Y48B6A.6b.1
      Y48B6A.6c.1
    Other_sequence (40)
    Associated_feature: WBsf644832
      WBsf658394
      WBsf658395
      WBsf990647
      WBsf990648
      WBsf1013792
      WBsf222429
      WBsf222430
  Experimental_info: RNAi_result: WBRNAi00056884 Inferred_automatically: RNAi_primary
      WBRNAi00037235 Inferred_automatically: RNAi_primary
      WBRNAi00020738 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1627
      Expr7002
      Expr1017855
      Expr1035758
      Expr1160336
      Expr2011187
      Expr2029423
    Drives_construct: WBCnstr00002338
    Microarray_results (30)
    Expression_cluster (218)
    Interaction (11)
  Map_info: Map: II Position: 22.5653
    Positive: Positive_clone: Y48B6A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038072
    WBPaper00038491
    WBPaper00041587
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene